Journal Publications, 2012
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April
Journal of Virology
Differential Gag-specific polyfunctional T cell maturation patterns in HIV-1 elite controllers.
Ferrando-Martínez S, Casazza JP, Leal M, Machmach K, Muñoz-Fernández MÁ, Viciana P, Koup RA, Ruiz-Mateos E.
J Virol. 2012 Apr;86(7):3667-74. Epub 2012 Jan 25.
Trends in Immunology
A deep profiler's guide to cytometry.
Bendall SC, Nolan GP, Roederer M, Chattopadhyay PK.
Trends Immunol. 2012 Apr 2. [Epub ahead of print]
Public Library of Science One
Decreased Pre-existing Ad5 Capsid and Ad35 Neutralizing Antibodies Increase HIV-1 Infection Risk in the Step Trial Independent of Vaccination.
Cheng C, Wang L, Gall JG, Nason M, Schwartz RM, McElrath MJ, Derosa SC, Hural J, Corey L, Buchbinder SP, Nabel GJ.
PLoS One. 2012;7(3):e33969. Epub 2012 Apr 4.
New England Journal of Medicine
Immune-correlates analysis of an HIV-1 vaccine efficacy trial.
Haynes BF, Gilbert PB, McElrath MJ, Zolla-Pazner S, Tomaras GD, Alam SM, Evans DT, Montefiori DC, Karnasuta C, Sutthent R, Liao HX, DeVico AL, Lewis GK, Williams C, Pinter A, Fong Y, Janes H, DeCamp A, Huang Y, Rao M, Billings E, Karasavvas N, Robb ML, Ngauy V, de Souza MS, Paris R, Ferrari G, Bailer RT, Soderberg KA, Andrews C, Berman PW, Frahm N, De Rosa SC, Alpert MD, Yates NL, Shen X, Koup RA, Pitisuttithum P, Kaewkungwal J, Nitayaphan S, Rerks-Ngarm S, Michael NL, Kim JH.
N Engl J Med. 2012 Apr 5;366(14):1275-86.
Cytometry A
Brilliant violet fluorophores: A new class of ultrabright fluorescent compounds for immunofluorescence experiments.
Chattopadhyay PK, Gaylord B, Palmer A, Jiang N, Raven MA, Lewis G, Reuter MA, Nur-Ur Rahman AK, Price DA, Betts MR, Roederer M.
Cytometry A. 2012 Apr 6. doi: 10.1002/cyto.a.22043. [Epub ahead of print]
Virology
Breadth of cellular and humoral immune responses elicited in rhesus monkeys by multi-valent mosaic and consensus immunogens.
Santra S, Muldoon M, Watson S, Buzby A, Balachandran H, Carlson KR, Mach L, Kong WP, McKee K, Yang ZY, Rao SS, Mascola JR, Nabel GJ, Korber BT, Letvin NL.
Virology. 2012 Apr 20. [Epub ahead of print]
Journal of Medicinal Chemistry
Design, synthesis and antiviral activity of entry inhibitors that target the CD4-binding site of HIV-1.
Curreli F, Choudhury S, Pyatkin I, Zagorodnikov VP, Bulay AK, Altieri A, Kwon YD, Kwong PD, Debnath AK.
J Med Chem. 2012 Apr 23. [Epub ahead of print]
Journal of Medicinal Chemistry
Structure-Based Design, Synthesis, and Characterization of Dual Hotspot Small-Molecule HIV-1 Entry Inhibitors.
Lalonde JM, Kwon YD, Jones DM, Sun AW, Courter JR, Soeta T, Kobayashi T, Princiotto AM, Wu X, Schön A, Freire E, Kwong PD, Mascola JR, Sodroski J, Madani N, Smith AB 3rd.
J Med Chem. 2012 Apr 23. [Epub ahead of print]
Journal of Virology
Envelope variable region 4 is the first target of neutralizing antibodies in early simian immunodeficiency virus mac251 infection of rhesus monkeys.
Yeh WW, Brassard LM, Miller CA, Basavapathruni A, Zhang J, Rao SS, Nabel GJ, Mascola JR, Letvin NL, Seaman MS.
J Virol. 2012 Apr 24. [Epub ahead of print]
March
Trends in Immunology
Pathogen-specific T cell depletion and reactivation of opportunistic pathogens in HIV infection.
Geldmacher C, Koup RA.
Trends Immunol. 2012 Mar 5. [Epub ahead of print]
The Journal of Biological Chemistry
Peptides from the second extracellular loop of the C-C chemokine receptor type 5 (CCR5) inhibit diverse strains of HIV-1.
Dogo-Isonagie C, Lam S, Gustchina E, Acharya P, Yang Y, Shahzad-Ul-Hussan S, Clore GM, Kwong PD, Bewley CA.
J Biol Chem. 2012 Mar 8. [Epub ahead of print]
Journal of Virology
Selection Pressure on HIV-1 Envelope by Broadly Neutralizing Antibodies to the Conserved CD4-Binding Site.
Wu X, Wang C, O'Dell S, Li Y, Keele BF, Yang Z, Imamichi H, Doria-Rose N, Hoxie JA, Connors M, Shaw GM, Wyatt RT, Mascola JR.
J Virol. 2012 Mar 14. [Epub ahead of print]
Journal of Virology
Virus inhibition activity of effector memory CD8+ T cells determines Simian Immunodeficiency Virus load in vaccinated monkeys after vaccine breakthrough infection.
Yamamoto T, Johnson MJ, Price DA, Wolinsky DI, Almeida JR, Petrovas C, Nason M, Yeh WW, Shen L, Roederer M, Rao SS, McDermott AB, Lefebvre F, Nabel GJ, Haddad EK, Letvin NL, Douek DC, Koup RA.
J Virol. 2012 Mar 14. [Epub ahead of print]
Cytometry Part A
OMIP-005: Quality and phenotype of antigen-responsive rhesus macaque T cells.
Foulds KE, Donaldson M, Roederer M.
Cytometry A. 2012 Mar 21. doi: 10.1002/cyto.a.22008. [Epub ahead of print] No abstract available.
Cytometry Part A
OMIP-009: Characterization of antigen-specific human T-cells.
Lamoreaux L, Koup RA, Roederer M.
Cytometry A. 2012 Mar 21. doi: 10.1002/cyto.a.22042. [Epub ahead of print] No abstract available.
AIDS
CD8 T cells in PreventingHIV Infection and Disease.
McDermott AB, Koup RA.
AIDS. 2012 Mar 23. [Epub ahead of print] No abstract available.
Vaccine
Immunogenicity and clinical protection against equine influenza by gene-based DNA vaccination of ponies.
Ault A, Zajac AM, Kong WP, Gorres JP, Royals M, Wei CJ, Bao S, Yang ZY, Reedy SE, Sturgill TL, Page AE, Donofrio-Newman J, Adams AA, Balasuriya UB, Horohov DW, Chambers TM, Nabel GJ, Rao SS.
Vaccine. 2012 Mar 23. [Epub ahead of print]
Proceedings of the National Academy of Sciences USA
Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops.
Kwon YD, Finzi A, Wu X, Dogo-Isonagie C, Lee LK, Moore LR, Schmidt SD, Stuckey J, Yang Y, Zhou T, Zhu J, Vicic DA, Debnath AK, Shapiro L, Bewley CA, Mascola JR, Sodroski JG, Kwong PD.
Proc Natl Acad Sci U S A. 2012 Mar 26. [Epub ahead of print]
February
Journal of Virology
Two Distinct Broadly Neutralizing Antibody Specificities of Different Clonal Lineages in a Single HIV-1-infected Donor: Implications for Vaccine Design.
Bonsignori M, Montefiori DC, Wu X, Chen X, Hwang KK, Tsao CY, Kozink DM, Parks RJ, Tomaras GD, Crump JA, Kapiga SH, Sam NE, Kwong PD, Kepler TB, Liao HX, Mascola JR, Haynes BF.
J Virol. 2012 Feb 1. [Epub ahead of print]
Journal of Virology
PG V04, an HIV-1 gp120 CD4 binding site antibody, is broad and potent in neutralization but does not induce conformational changes characteristic of CD4.
Falkowska E, Ramos A, Feng Y, Zhou T, Moquin S, Walker LM, Wu X, Seaman MS, Wrin T, Kwong PD, Wyatt RT, Mascola JR, Poignard P, Burton DR.
J Virol. 2012 Feb 15. [Epub ahead of print]
Journal of Biological Chemistry
Biochemically Defined HIV-1 Envelope Glycoprotein Variant Immunogens Display Differential Binding and Neutralizing Specificities to the CD4-binding Site.
Feng Y, McKee K, Tran K, O'Dell S, Schmidt SD, Phogat A, Forsell MN, Karlsson Hedestam GB, Mascola JR, Wyatt RT.
J Biol Chem. 2012 Feb 17;287(8):5673-86. Epub 2011 Dec 13.
Journal of General Virology
Attenuation of CD4+ T Cell Function by Human Adenovirus Type-35 is Mediated by the Knob Protein.
Adams WC, Berenson RJ, Karlsson Hedestam GB, Lieber A, Koup RA, Loré K.
J Gen Virol. 2012 Feb 22. [Epub ahead of print]
Methods
Cytometry: Today's technology and tomorrow's horizons.
Chattopadhyay P, Roederer M.
Methods. 2012 Feb 25. [Epub ahead of print]
Bioinformatics
Early Immunologic Correlates of HIV Protection can be Identified from Computational Analysis of Complex Multivariate T-cell Flow Cytometry Assays.
Aghaeepour N, Chattopadhyay PK, Ganesan A, O'Neill K, Zare H, Jalali A, Hoos HH, Roederer M, Brinkman RR.
Bioinformatics. 2012 Feb 29. [Epub ahead of print]
Science Translational Medicine
Productive Replication of Ebola Virus Is Regulated by the c-Abl1 Tyrosine Kinase.
García M, Cooper A, Shi W, Bornmann W, Carrion R, Kalman D, Nabel GJ.
Sci Transl Med. 2012 Feb 29;4(123):123ra24.
January
Blood
Selective expansion of polyfunctional pathogen-specific CD4+ T cells in HIV-1-infected patients with immune reconstitution inflammatory syndrome.
Mahnke YD, Greenwald JH, Dersimonian R, Roby G, Antonelli LR, Sher A, Roederer M, Sereti I.
Blood. 2012 Jan 4. [Epub ahead of print]
Journal of Virology
Filoviruses Require Endosomal Cysteine Proteases for Entry But Exhibit Distinct Protease Preferences.
Misasi J, Chandran K, Yang JY, Considine B, Filone CM, Côté M, Sullivan N, Fabozzi G, Hensley L, Cunningham J.
J Virol. 2012 Jan 11. [Epub ahead of print]
Journal of Immunology
Targeting the vaginal mucosa with human papillomavirus pseudovirion vaccines delivering simian immunodeficiency virus DNA.
Gordon SN, Kines RC, Kutsyna G, Ma ZM, Hryniewicz A, Roberts JN, Fenizia C, Hidajat R, Brocca-Cofano E, Cuburu N, Buck CB, Bernardo ML, Robert-Guroff M, Miller CJ, Graham BS, Lowy DR, Schiller JT, Franchini G.
J Immunol. 2012 Jan 15;188(2):714-23. Epub 2011 Dec 14.
Journal of Virology
HIV-1 Neutralization Coverage Is Improved by Combining Monoclonal Antibodies That Target Independent Epitopes.
Doria-Rose NA, Louder MK, Yang Z, O'Dell S, Nason M, Schmidt SD, McKee K, Seaman MS, Bailer RT, Mascola JR.
J Virol. 2012 Jan 18. [Epub ahead of print]
Journal of Virology
Structural basis for broad detection of genogroup II noroviruses by a monoclonal antibody that binds to a site occluded in the viral particle.
Hansman GS, Taylor DW, McLellan JS, Smith TJ, Georgiev I, Tame JR, Park SY, Yamazaki M, Gondaira F, Miki M, Katayama K, Murata K, Kwong PD.
J Virol. 2012 Jan 25. [Epub ahead of print]
Journal of Virology
HLA B*5701+ Long-Term Nonprogressors/Elite Controllers are not Distinguished from Progressors by the Clonal Composition of HIV-Specific CD8+ T-Cells.
Mendoza D, Royce C, Ruff LE, Ambrozak DR, Quigley MF, Dang T, Venturi V, Price DA, Douek DC, Migueles SA, Connors M.
J Virol. 2012 Jan 25. [Epub ahead of print]
New England Journal of Medicine
Cold urticaria, immunodeficiency, and autoimmunity related to PLCG2 deletions.
Ombrello MJ, Remmers EF, Sun G, Freeman AF, Datta S, Torabi-Parizi P, Subramanian N, Bunney TD, Baxendale RW, Martins MS, Romberg N, Komarow H, Aksentijevich I, Kim HS, Ho J, Cruse G, Jung MY, Gilfillan AM, Metcalfe DD, Nelson C, O'Brien M, Wisch L, Stone K, Douek DC, Gandhi C, Wanderer AA, Lee H, Nelson SF, Shianna KV, Cirulli ET, Goldstein DB, Long EO, Moir S, Meffre E, Holland SM, Kastner DL, Katan M, Hoffman HM, Milner JD.
N Engl J Med. 2012 Jan 26;366(4):330-8. Epub 2012 Jan 11.
Nature Medicine
Preexisting influenza-specific CD4(+) T cells correlate with disease protection against influenza challenge in humans.
Wilkinson TM, Li CK, Chui CS, Huang AK, Perkins M, Liebner JC, Lambkin-Williams R, Gilbert A, Oxford J, Nicholas B, Staples KJ, Dong T, Douek DC, McMichael AJ, Xu XN.
Nat Med. 2012 Jan 29. doi: 10.1038/nm.2612. [Epub ahead of print]
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