Resources for Researchers

NIAID offers many resources to support your research, including reagents, model organisms, and tissue samples, to name just a few. Use the filters under Filter Search Results to narrow your search, or simply enter specific search terms in the search field.

Showing results filtered by:
ClEAR ALL
Genomics & Advanced Technologies
Technology/Software
17 Results

Bioinformatics and Computational Biosciences Branch Services

The Bioinformatics and Computational Biosciences Branch (BCBB) offers a suite of scientific services and resources for the NIAID research community and its collaborators. BCBB provides expertise and computational solutions to researchers at all levels of experience.

Chicago Center for Functional Annotation (CCFA)

The Chicago Center for Functional Annotation (CCFA) is defining gene function on multiple scales, using a multi-disciplinary set of cellular, genetic, molecular, and biochemical approaches.

Eukaryotic Pathogen Database Resources (EuPathDB)

EuPathDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated database covering eukaryotic pathogens.

Functional Lists of Unknown TB Entities (FLUTE)

FLUTE is a Functional Genomics Center funded by NIAID, with the goal of discovering the roles of genes from Mtb with previously unknown functions. In addition FLUTE aims to establish an efficient pathway for identifying gene function that could serve as a paradigm for other bacterial species.

FungiDB

FungiDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated genomic and functional genomic database for the kingdom Fungi.

Genes Unknown in Acinetobacter baumannii (GUNK)

GUNK center is part of the NIAID Functional Genomics Program. This center was created to investigate the role of previously uncharacterized genes of A. baumannii in its ability to cause human disease. Three projects have been established to:

Genomic Centers for Infectious Diseases (GCID) Resources

The GCID use and develop or improve innovative applications of genomic technologies, such as RNA sequencing and metagenomics, and provide rapid and cost-efficient production of high-quality genome sequences of microorganisms, invertebrate vectors of infectious diseases, and hosts and host microbiomes. Multiple strains and isolates of specific microbial species, populations and communities have been and continue to be sequenced.

Heterogeneity in Human Immune Cells

Heterogeneity in Human Immune Cells is a website providing interactive figures (iFigs) for a recent study of protein expression heterogeneity in human immune cells conducted by Dr.

Immcantation Portal

The Immcantation framework is developed as a start-to-finish analytical ecosystem for large-scale characterization of B cell receptor (BCR) and T cell receptor (TCR) repertoires from high-throughput adaptive immune receptor repertoire sequencing (AIRR-seq) datasets.

Influenza Research Database (IRD)

The IRD, one of the NIAID-funded Bioinformatics Resource Centers, provides a suite of tools for analysis of all types of influenza data and a personal work bench on which each scientist can store lists of important data selected from that available on IRD.

Nephele

Nephele is a microbiome analysis engine which brings together microbiome data and analysis tools in a cloud computing environment. It offers robust, multi-step microbiome analysis pipelines, with no setup time or cost.

NIAID Microbiome Program: Sequencing

NIAID’s microbiome sequencing facility studies the structure and function of the microbiome associated with various hosts and body sites. This facility has one dedicated team and is equipped with an Ilumina MiSeq, which can sequence whole genomes or specific amplicons.

PATRIC (Bacterial Bioinformatics Resource Center)

PATRIC, one of the NIAID-funded Bioinformatics Resource Centers, is an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools.

QuSAGE: Quantitative Set Analysis for Gene Expression

This Gene Set Enrichment-type test designed for analysis of microarray and RNASeq data is designed to provide a faster, more accurate, and easier to understand test for gene expression studies. QuSAGE extends previous methods with a complete probability density function (PDF).

Systems Biology Consortium Resources

The Systems Biology Consortium for Infectious Diseases is a community of systems biologists who aim to integrate experimental biology and computational tools and modeling across temporal and spatial scales towards a better understanding of infectious diseases.

VectorBase

VectorBase, one of the NIAID-funded Bioinformatics Resource Centers (BRC), provides genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens.

Virus Pathogen Resource (ViPR)

The Virus Pathogen Resource (ViPR), one of the NIAID-funded Bioinformatics Resource Centers, is a publicly available one-stop database and analysis resource that supports the research of viral pathogens in the NIAID Category A-C Priority Pathogen lists and those causing (