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Resources for Researchers

NIAID offers many resources to support your research, including reagents, model organisms, and tissue samples, to name just a few. Use the filters under Filter Search Results to narrow your search, or simply enter specific search terms in the search field.

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Bioinformatics and Computational Biosciences Branch Services

The Bioinformatics and Computational Biosciences Branch (BCBB) offers a suite of scientific services and resources for the NIAID research community and its collaborators. BCBB provides expertise and computational solutions to researchers at all levels of experience.

Chicago Center for Functional Annotation (CCFA)

The Chicago Center for Functional Annotation (CCFA) is defining gene function on multiple scales, using a multi-disciplinary set of cellular, genetic, molecular, and biochemical approaches.

Eukaryotic Pathogen Database Resources (EuPathDB)

EuPathDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated database covering eukaryotic pathogens.

Functional Lists of Unknown TB Entities (FLUTE)

FLUTE is a Functional Genomics Center funded by NIAID, with the goal of discovering the roles of genes from Mtb with previously unknown functions. In addition FLUTE aims to establish an efficient pathway for identifying gene function that could serve as a paradigm for other bacterial species.

FungiDB

FungiDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated genomic and functional genomic database for the kingdom Fungi.

Genes Unknown in Acinetobacter baumannii (GUNK)

GUNK center is part of the NIAID Functional Genomics Program. This center was created to investigate the role of previously uncharacterized genes of A. baumannii in its ability to cause human disease. Three projects have been established to:

Genomic Centers for Infectious Diseases (GCID) Resources

The GCID use and develop or improve innovative applications of genomic technologies, such as RNA sequencing and metagenomics, and provide rapid and cost-efficient production of high-quality genome sequences of microorganisms, invertebrate vectors of infectious diseases, and hosts and host microbiomes. Multiple strains and isolates of specific microbial species, populations and communities have been and continue to be sequenced.

Heterogeneity in Human Immune Cells

Heterogeneity in Human Immune Cells is a website providing interactive figures (iFigs) for a recent study of protein expression heterogeneity in human immune cells conducted by Dr.

HIV Database and Analysis Unit

The HIV Database & Analysis Unit provides an integrated repository of HIV sequence and immunology published data, by curating & maintaining a relational database with searchable web access for the scientific community; and (ii) develop web-based computation analysis methods and tools for

Immcantation Portal

The Immcantation framework is developed as a start-to-finish analytical ecosystem for large-scale characterization of B cell receptor (BCR) and T cell receptor (TCR) repertoires from high-throughput adaptive immune receptor repertoire sequencing (AIRR-seq) datasets.

Immune Epitope Database and Analysis Resource (IEDB)

This free resource offers easy searching of experimental data characterizing antibody and T cell epitopes studied in humans, non-human primates, and other animal species.

Influenza Research Database (IRD)

The IRD, one of the NIAID-funded Bioinformatics Resource Centers, provides a suite of tools for analysis of all types of influenza data and a personal work bench on which each scientist can store lists of important data selected from that available on IRD.

Nephele

Nephele is a microbiome analysis engine which brings together microbiome data and analysis tools in a cloud computing environment. It offers robust, multi-step microbiome analysis pipelines, with no setup time or cost.

NIAID Microbiome Program: Metabolite Mass Spectrometry

MALDI Biotyper (MBT) is a technology that identifies microorganisms using matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry to measure a unique peptide mass fingerprint.

NIAID Microbiome Program: Sequencing

NIAID’s microbiome sequencing facility studies the structure and function of the microbiome associated with various hosts and body sites. This facility has one dedicated team and is equipped with an Ilumina MiSeq, which can sequence whole genomes or specific amplicons.

NIH 3D Print Exchange

The NIH 3D Print Exchange provides models in formats that are readily compatible with 3D printers, and offers a unique set of tools to create and share 3D-printable models related to biomedical science.

Papillomavirus Episteme (PaVE)

The PapillomaVirus Episteme (PaVE) provides highly organized and curated papillomavirus genomics information and tools to the scientific community for research on the Papillomaviridae family of viruses. The PaVE consists of a database and web applications that support the storage, annotation, analysis, and exchange of information. To the extent possible, the PaVE adopts an open source software approach and emphasizes integration and reuse of existing tools.

PATRIC (Bacterial Bioinformatics Resource Center)

PATRIC, one of the NIAID-funded Bioinformatics Resource Centers, is an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools.

QuSAGE: Quantitative Set Analysis for Gene Expression

This Gene Set Enrichment-type test designed for analysis of microarray and RNASeq data is designed to provide a faster, more accurate, and easier to understand test for gene expression studies. QuSAGE extends previous methods with a complete probability density function (PDF).

Simmune Project

Simmune is a suite of software tools that guides the user through the multiple hierarchical scales of cellular behavior, facilitating the generation of comprehensive models.

Simplified Presentation of Incredibly Complex Evaluations (SPICE)

SPICE is a data-mining software application that analyzes large FLOWJO data sets from polychromatic flow cytometry and organizes the normalized data graphically. SPICE enables users to discover potential correlations in their experimental data within complex data sets.

Systems Biology Consortium Resources

The Systems Biology Consortium for Infectious Diseases is a community of systems biologists who aim to integrate experimental biology and computational tools and modeling across temporal and spatial scales towards a better understanding of infectious diseases.

Systems Immunology Toolkit

The tools in the Systems Immunology Toolkit will collectively allow you to upload microarray data, view that data on a gene-by-gene basis, overlay clinical data, analyze your data using a modular framework, compare your data to other datasets and diseases, and get a quick functional interpretatio

TrialShare

TrialShare is a transformative approach to data-sharing that enables clinical trial transparency.

VectorBase

VectorBase, one of the NIAID-funded Bioinformatics Resource Centers (BRC), provides genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens.