Resources for Researchers

NIAID offers many resources to support your research, including reagents, model organisms, and tissue samples, to name just a few. Use the filters under Filter Search Results to narrow your search, or simply enter specific search terms in the search field.

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  • Genomic Centers for Infectious Diseases (GCID) Resources

    The GCID use and develop or improve innovative applications of genomic technologies, such as RNA sequencing and metagenomics, and provide rapid and cost-efficient production of high-quality genome sequences of microorganisms, invertebrate vectors of infectious diseases, and hosts and host... - 2017-08-22 17:18

  • Non-Obese Diabetic (NOD) Mouse BAC Library

    The Non-Obese Diabetic (NOD) mouse, which spontaneously develops type 1 diabetes, is a valuable animal model that is used extensively in research exploring the etiology, prevention, and treatment of this disease. It is a vital research tool for testing promising prevention and treatment strategies... - 2017-08-28 15:27

  • PATRIC (Bacterial Bioinformatics Resource Center)

    PATRIC, one of the NIAID-funded Bioinformatics Resource Centers, is an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools. PATRIC sharpens and hones the... - 2017-08-28 15:27

  • Influenza Research Database (IRD)

    The IRD, one of the NIAID-funded Bioinformatics Resource Centers, provides a suite of tools for analysis of all types of influenza data and a personal work bench on which each scientist can store lists of important data selected from that available on IRD.... - 2017-08-28 15:27

  • Orfeome

    The Orfeome Project is part of the NIAID-supported Functional Genomics Program. The project is a collaboration of immunolgy and RNA/DNA virus pathogenesis experts, working together to address the hypothesis that RNA and DNA viruses encode common and unique mechanisms to manipulate virus replication... - 2017-08-28 15:27

  • Genes Unknown in Acinetobacter baumannii (GUNK)

    GUNK center is part of the NIAID Functional Genomics Program. This center was created to investigate the role of previously uncharacterized genes of A. baumannii in its ability to cause human disease. Three projects have been established to: Use a genomic approach to broadly identify the role of... - 2017-08-28 15:27

  • FungiDB

    FungiDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes... - 2017-08-28 15:27

  • Functional Lists of Unknown TB Entities (FLUTE)

    FLUTE is a Functional Genomics Resource Center funded by NIAID, with the goal of defining functions for unknown ORFs, hypothetical genes, and non-coding RNAs in Mtb.... - 2017-08-28 15:27

  • Eukaryotic Pathogen Database Resources (EuPathDB)

    EuPathDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated database covering eukaryotic pathogens. While these organisms are supported by a taxon-specific database/website built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these... - 2017-08-28 15:27

  • Filariasis Research Reagent Resource Center (FR3)

    The Filariasis Research Reagent Resource Center (FR3) maintains oversight of filarial parasites, SOPs, and molecular reagents. FR3 is comprised of two divisions: The Parasite Resource Division and the Molecular Resources Division.... - 2017-08-29 17:42

  • ImmuneSpace

    The ImmuneSpace database is currently composed of 21 studies covering 10 types of assays and 2,500 total participants. Gene Expression, Flow Cytometry, and CyTOF are among the included assay types; participants include children, adults, and elderly after vaccination or infection, as well as healthy... - 2017-08-30 12:45

  • Systems Immunology Toolkit

    The tools in the Systems Immunology Toolkit will collectively allow you to upload microarray data, view that data on a gene-by-gene basis, overlay clinical data, analyze your data using a modular framework, compare your data to other datasets and diseases, and get a quick functional interpretation... - 2017-08-30 12:45

  • Heterogeneity in Human Immune Cells

    Heterogeneity in Human Immune Cells is a website providing interactive figures (iFigs) for a recent study of protein expression heterogeneity in human immune cells conducted by Dr. John Tsang's group (Systems Genomics and Bioinformatics Unit) at the Laboratory of Immune System Biology, National... - 2017-08-30 12:45

  • 3D Reconstruction via Stereoscopy for the Study of Mosquito Swarms

    Male mosquitoes swarm to find mates, but the characteristics of these swarms have not often been quantitatively analyzed in the field. This site includes information on a simple method used recently to localize individual Anopheles gambiae in a swarm via stereoscopic image analysis of video footage... - 2017-09-07 14:52


    JOINSOLVER is a web-based software program developed for human immunoglobulin V(D)J recombination analysis, and created by the National Institutes of Health, National Institute of Arthritis and Musculosketelal and Skin Diseases (NIAMS) and the Center for Information Technology (CIT). JOINSOLVER... - 2017-09-07 14:52

  • Nephele

    Nephele is a microbiome analysis engine which brings together microbiome data and analysis tools in a cloud computing environment. It offers robust, multi-step microbiome analysis pipelines, with no setup time or cost.... - 2017-09-07 14:52

  • NIH 3D Print Exchange

    The NIH 3D Print Exchange provides models in formats that are readily compatible with 3D printers, and offers a unique set of tools to create and share 3D-printable models related to biomedical science. The NIH 3D Print Exchange eliminates this gap with an open, comprehensive, and interactive... - 2017-09-07 14:52

  • Papillomavirus Episteme (PaVE)

    The PapillomaVirus Episteme (PaVE) provides highly organized and curated papillomavirus genomics information and tools to the scientific community for research on the Papillomaviridae family of viruses. The PaVE consists of a database and web applications that support the storage, annotation,... - 2017-09-07 14:52

  • Simplified Presentation of Incredibly Complex Evaluations (SPICE)

    SPICE is a data-mining software application that analyzes large FLOWJO data sets from polychromatic flow cytometry and organizes the normalized data graphically. SPICE enables users to discover potential correlations in their experimental data within complex data sets. Many potential applications... - 2017-09-07 14:52

  • International Epidemiologic Database to Evaluate AIDS Data Exchange Standard (IeDEA DES)

    A common data model for sharing observational HIV data has been developed by the International epidemiology Databases to Evaluate AIDS (IeDEA). The IeDEA DES is used by the seven operational regions of IeDEA to exchange data with each other for collaborative research studies. The IeDEA DES... - 2017-09-08 14:17

  • Structural Genomics Centers for Infectious Diseases: Resources

    The Structural Genomics Centers for Infectious Diseases provide the research community with: 3-D protein structures and protein-ligand complexes Sequence-verified clones and peptides Services that deliver requested 3-D structure determination Molecular screening of proteins in complex with... - 2017-09-08 14:17

  • Bioinformatics and Computational Biosciences Branch Services

    The Bioinformatics and Computational Biosciences Branch (BCBB) offers a suite of scientific services and resources for the NIAID research community and its collaborators. BCBB provides expertise and computational solutions to researchers at all levels of experience. Computational biologists... - 2017-09-21 15:27

  • NIAID Microbiome Program: Sequencing

    NIAID’s microbiome sequencing facility studies the structure and function of the microbiome associated with various hosts and body sites. This facility has one dedicated staff member and is equipped with an Ilumina MiSeq, which can sequence whole genomes or specific amplicons. Whole genome... - 2017-09-21 16:15

  • Biocontainment Laboratory: University of Texas Medical Branch Galveston National Laboratory

    As one of two National Biocontainment Laboratories constructed under grants awarded by the National Institute of Allergy and Infectious Diseases/National Institutes of Health (NIAID/NIH), the Galveston National Laboratory (GNL) enables progress in our understanding of the fundamental mechanisms... - 2017-10-11 13:36

  • QuSAGE: Quantitative Set Analysis for Gene Expression

    This Gene Set Enrichment-type test designed for analysis of microarray and RNASeq data is designed to provide a faster, more accurate, and easier to understand test for gene expression studies. QuSAGE extends previous methods with a complete probability density function (PDF). From this PDF, P... - 2018-02-12 19:02

  • Immcantation Portal

    The Immcantation framework is developed as a start-to-finish analytical ecosystem for large-scale characterization of B cell receptor (BCR) and T cell receptor (TCR) repertoires from high-throughput adaptive immune receptor repertoire sequencing (AIRR-seq) datasets. Immcantation provides Python and...

    Zshad - 2018-04-18 13:45

  • NIAID Bioinformatics Portal

    The portal brings together some exciting features including: links to BCBB’s training resources; a section of scripts, code, and programs created by NIAID researchers downloadable from GitHub; and a curated calendar of events with entries focused on bioinformatics and computational biology....

    Zshad - 2018-05-24 11:05