Resources for Researchers

NIAID offers many resources to support your research, including reagents, model organisms, and tissue samples, to name just a few. Use the filters under Filter Search Results to narrow your search, or simply enter specific search terms in the search field.

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  • Genomic Centers for Infectious Diseases (GCID) Resources

    The GCID use and develop or improve innovative applications of genomic technologies, such as RNA sequencing and metagenomics, and provide rapid and cost-efficient production of high-quality genome sequences of microorganisms, invertebrate vectors of infectious diseases, and hosts and host...

    coanstevensje@nih.gov - 2017-08-22 17:18

  • Virus Pathogen Resource (ViPR)

    The Virus Pathogen Resource (ViPR), one of the NIAID-funded Bioinformatics Resource Centers, is a publicly available one-stop database and analysis resource that supports the research of viral pathogens in the NIAID Category A-C Priority Pathogen lists and those causing (re)emerging infectious...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • VectorBase

    VectorBase, one of the NIAID-funded Bioinformatics Resource Centers (BRC), provides genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • PATRIC (Bacterial Bioinformatics Resource Center)

    PATRIC, one of the NIAID-funded Bioinformatics Resource Centers, is an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools. PATRIC sharpens and hones the...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Influenza Research Database (IRD)

    The IRD, one of the NIAID-funded Bioinformatics Resource Centers, provides a suite of tools for analysis of all types of influenza data and a personal work bench on which each scientist can store lists of important data selected from that available on IRD....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • FungiDB

    FungiDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Eukaryotic Pathogen Database Resources (EuPathDB)

    EuPathDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated database covering eukaryotic pathogens. While these organisms are supported by a taxon-specific database/website built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • HIV Database and Analysis Unit

    The HIV Database & Analysis Unit provides an integrated repository of HIV sequence and immunology published data, by curating & maintaining a relational database with searchable web access for the scientific community; and (ii) develop web-based computation analysis methods and tools for...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • ACTG/IMPAACT Specimen Repositories

    The specimen repositories are a collaboration between the ACTG and IMPAACT clinical trial networks to make the large body of specimens collected for HIV research available to investigators. The specimens stored at the repositories were initially collected for specific studies that have concluded,...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Primary Immunodeficiency (PI) Diseases Registry at USIDNET

    The Primary Immunodeficiency (PI) Diseases Registry collects validated data on all PI diagnoses from patients who give Informed Consent. The de-identified data in the registry is freely disseminated to those with research questions about PI diseases....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • ImmPort

    ImmPort is a Web portal that contains data from NIAID-funded immunology studies, including basic research and clinical trials. The portal provides online tools that allow users to analyze the data and visualize the results. ImmPort enables the integration of data from a variety of laboratories and...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • ImmuneSpace

    The ImmuneSpace database is currently composed of 21 studies covering 10 types of assays and 2,500 total participants. Gene Expression, Flow Cytometry, and CyTOF are among the included assay types; participants include children, adults, and elderly after vaccination or infection, as well as healthy...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • Multicenter AIDS Cohort Study (MACS) Public Data Set

    The Multicenter AIDS Cohort Study (MACS) is an ongoing prospective study of the natural and treated histories of HIV-1 infection in homosexual and bisexual men conducted by sites located in Baltimore, Chicago, Pittsburgh and Los Angeles. MACS public data set has been released from CAMACS (Center for...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • Systems Immunology Toolkit

    The tools in the Systems Immunology Toolkit will collectively allow you to upload microarray data, view that data on a gene-by-gene basis, overlay clinical data, analyze your data using a modular framework, compare your data to other datasets and diseases, and get a quick functional interpretation...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • Immune Epitope Database and Analysis Resource (IEDB)

    This free resource offers easy searching of experimental data characterizing antibody and T cell epitopes studied in humans, non-human primates, and other animal species. Epitopes involved in infectious disease, allergy, autoimmunity, and transplant are included.The database contains detailed...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • Heterogeneity in Human Immune Cells

    Heterogeneity in Human Immune Cells is a website providing interactive figures (iFigs) for a recent study of protein expression heterogeneity in human immune cells conducted by Dr. John Tsang's group (Systems Genomics and Bioinformatics Unit) at the Laboratory of Immune System Biology, National...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • TrialShare

    TrialShare is a transformative approach to data-sharing that enables clinical trial transparency. TrialShare provides clinical trial investigators the unprecedented ability to access de-identified study data, review published analysis methods, and perform real-time, interactive graphical analyses in...

    coanstevensje@nih.gov - 2017-08-30 19:13

  • 3D Reconstruction via Stereoscopy for the Study of Mosquito Swarms

    Male mosquitoes swarm to find mates, but the characteristics of these swarms have not often been quantitatively analyzed in the field. This site includes information on a simple method used recently to localize individual Anopheles gambiae in a swarm via stereoscopic image analysis of video footage...

    coanstevensje@nih.gov - 2017-09-07 14:52

  • Papillomavirus Episteme (PaVE)

    The PapillomaVirus Episteme (PaVE) provides highly organized and curated papillomavirus genomics information and tools to the scientific community for research on the Papillomaviridae family of viruses. The PaVE consists of a database and web applications that support the storage, annotation,...

    coanstevensje@nih.gov - 2017-09-07 14:52

  • DAIDS Regulatory Support Center (RSC)

    The RSC Public Website, run by the DAIDS Regulatory Support Center (RSC) contractor, has been used in the DAIDS community for over 10 years and is a primary platform to communicate updates to templates, process changes, and other information needed by the RSC research community. Website resources...

    coanstevensje@nih.gov - 2017-09-08 14:17

  • Structural Genomics Centers for Infectious Diseases: Resources

    The Structural Genomics Centers for Infectious Diseases provide the research community with: 3-D protein structures and protein-ligand complexes Sequence-verified clones and peptides Services that deliver requested 3-D structure determination Molecular screening of proteins in complex with...

    coanstevensje@nih.gov - 2017-09-08 14:17

  • Microbicide Trials Network (MTN) Resources

    The Microbicide Trials Network (MTN) is a NIAID-funded worldwide collaborative clinical trials network focused on preventing the sexual transmission of HIV. The MTN accepts concepts for new protocols, ancillary study proposals, secondary data analysis requests, and dataset requests....

    coanstevensje@nih.gov - 2017-09-27 14:05

  • Women's Interagency HIV Study (WIHS) Specimen Repositories

    The Women's Interagency HIV Study (WIHS) collects and stores a variety of biological specimens. Inventory may be housed at the national level, or a subset at the local level. The WIHS Data Management and Analysis Center (WDMAC) coordinates and facilitates completion of specimen requests....

    coanstevensje@nih.gov - 2017-10-02 15:24

  • Women's Interagency HIV Study (WIHS) Public Dataset

    In addition to its role in clinical epidemiology, the Women's Interagency HIV Study (WIHS) conducts high quality pathogenesis research, and is a unique resource for research because of the depth of data and specimens available from each study visit....

    coanstevensje@nih.gov - 2017-10-02 20:53

  • Multicenter AIDS Cohort Study (MACS) Specimen Repository

    The MACS collects and stores a variety of biological specimens. Inventory may be housed at the national level or a subset at the local level. The MACS Center for the Coordination and Analysis of MACS (CAMACS) coordinates and facilitates completion of specimen requests. ...

    coanstevensje@nih.gov - 2017-11-06 11:57

  • QuSAGE: Quantitative Set Analysis for Gene Expression

    This Gene Set Enrichment-type test designed for analysis of microarray and RNASeq data is designed to provide a faster, more accurate, and easier to understand test for gene expression studies. QuSAGE extends previous methods with a complete probability density function (PDF). From this PDF, P...

    coanstevensje@nih.gov - 2018-02-12 19:02

  • Immcantation Portal

    The Immcantation framework is developed as a start-to-finish analytical ecosystem for large-scale characterization of B cell receptor (BCR) and T cell receptor (TCR) repertoires from high-throughput adaptive immune receptor repertoire sequencing (AIRR-seq) datasets. Immcantation provides Python and...

    Zshad - 2018-04-18 13:45

  • NIAID Bioinformatics Portal

    The portal brings together some exciting features including: links to BCBB’s training resources; a section of scripts, code, and programs created by NIAID researchers downloadable from GitHub; and a curated calendar of events with entries focused on bioinformatics and computational biology....

    Zshad - 2018-05-24 11:05

  • Systems Biology Consortium Resources

    The Systems Biology Consortium for Infectious Diseases is a community of systems biologists who aim to integrate experimental biology and computational tools and modeling across temporal and spatial scales towards a better understanding of infectious diseases. Through a collaborative effort,...

    assefamh@nih.gov - 2018-07-26 14:28

  • Chicago Center for Functional Annotation (CCFA)

    The Chicago Center for Functional Annotation (CCFA) is defining gene function on multiple scales, using a multi-disciplinary set of cellular, genetic, molecular, and biochemical approaches. The primary goal of the CCFA is to define the biochemical and cellular functions of uncharacterized genes in...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Functional Lists of Unknown TB Entities (FLUTE)

    FLUTE is a Functional Genomics Resource Center funded by NIAID, with the goal of defining functions for unknown ORFs, hypothetical genes, and non-coding RNAs in Mtb....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Genes Unknown in Acinetobacter baumannii (GUNK)

    GUNK center is part of the NIAID Functional Genomics Program. This center was created to investigate the role of previously uncharacterized genes of A. baumannii in its ability to cause human disease. Three projects have been established to: Use a genomic approach to broadly identify the role of...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Orfeome

    The Orfeome Project is part of the NIAID-supported Functional Genomics Program. The project is a collaboration of immunolgy and RNA/DNA virus pathogenesis experts, working together to address the hypothesis that RNA and DNA viruses encode common and unique mechanisms to manipulate virus replication...

    coanstevensje@nih.gov - 2017-08-28 15:27