Resources for Researchers

NIAID offers many resources to support your research, including reagents, model organisms, and tissue samples, to name just a few. Use the filters under Filter Search Results to narrow your search, or simply enter specific search terms in the search field.

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  • Genomic Centers for Infectious Diseases (GCID) Resources

    The GCID use and develop or improve innovative applications of genomic technologies, such as RNA sequencing and metagenomics, and provide rapid and cost-efficient production of high-quality genome sequences of microorganisms, invertebrate vectors of infectious diseases, and hosts and host...

    coanstevensje@nih.gov - 2017-08-22 17:18

  • Consortium of Food Allergy Research Milk Allergy Resolution Calculator

    The Milk Allergy Resolution Calculator calculates the probability of milk allergy over time for patients....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Consortium of Food Allergy Research Egg Allergy Resolution Calculator

    The Egg Allergy Resolution Calculator calculates the probability of developling egg allergy over time for patients....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Virus Pathogen Resource (ViPR)

    The Virus Pathogen Resource (ViPR), one of the NIAID-funded Bioinformatics Resource Centers, is a publicly available one-stop database and analysis resource that supports the research of viral pathogens in the NIAID Category A-C Priority Pathogen lists and those causing (re)emerging infectious...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • VectorBase

    VectorBase, one of the NIAID-funded Bioinformatics Resource Centers (BRC), provides genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • PATRIC (Bacterial Bioinformatics Resource Center)

    PATRIC, one of the NIAID-funded Bioinformatics Resource Centers, is an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools. PATRIC sharpens and hones the...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Influenza Research Database (IRD)

    The IRD, one of the NIAID-funded Bioinformatics Resource Centers, provides a suite of tools for analysis of all types of influenza data and a personal work bench on which each scientist can store lists of important data selected from that available on IRD....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Genes Unknown in Acinetobacter baumannii (GUNK)

    GUNK center is part of the NIAID Functional Genomics Program. This center was created to investigate the role of previously uncharacterized genes of A. baumannii in its ability to cause human disease. Three projects have been established to: Use a genomic approach to broadly identify the role of...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • FungiDB

    FungiDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Functional Lists of Unknown TB Entities (FLUTE)

    FLUTE is a Functional Genomics Resource Center funded by NIAID, with the goal of defining functions for unknown ORFs, hypothetical genes, and non-coding RNAs in Mtb....

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Eukaryotic Pathogen Database Resources (EuPathDB)

    EuPathDB, one of the NIAID-funded Bioinformatics Resource Centers, is an integrated database covering eukaryotic pathogens. While these organisms are supported by a taxon-specific database/website built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • Chicago Center for Functional Annotation (CCFA)

    The Chicago Center for Functional Annotation (CCFA) is defining gene function on multiple scales, using a multi-disciplinary set of cellular, genetic, molecular, and biochemical approaches. The primary goal of the CCFA is to define the biochemical and cellular functions of uncharacterized genes in...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • IMPAACT Laboratory Center

    The main purpose of the International Maternal Pediatric Adolescent AIDS Clinical Trials (IMPAACT) Laboratory Center is to support the network’s scientific agenda by providing state of the art laboratory testing in support of clinical trials, new works concept sheets (NWCS), and data analysis...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • HIV Database and Analysis Unit

    The HIV Database & Analysis Unit provides an integrated repository of HIV sequence and immunology published data, by curating & maintaining a relational database with searchable web access for the scientific community; and (ii) develop web-based computation analysis methods and tools for...

    coanstevensje@nih.gov - 2017-08-28 15:27

  • FluDyNeMo

    The Influenza Dynamic Network Modeling Project (FluDyNeMo) is part of the Systems Biology for Infectious Diseases Research program. The focus of the project is to integrate multi-scale data collected over the course of influenza infections to identify key drivers of disease severity and...

    coanstevensje@nih.gov - 2017-08-29 17:42

  • FluOMICS

    FluOMICS is part of the Systems Biology for Infectious Diseases program. The project is composed of a highly diverse team of investigators throughout the US who propose a systematic approach to generate predictive models of influenza virus pathogenesis....

    coanstevensje@nih.gov - 2017-08-30 12:45

  • Systems Immunology Toolkit

    The tools in the Systems Immunology Toolkit will collectively allow you to upload microarray data, view that data on a gene-by-gene basis, overlay clinical data, analyze your data using a modular framework, compare your data to other datasets and diseases, and get a quick functional interpretation...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • Immune Epitope Database and Analysis Resource (IEDB)

    This free resource offers easy searching of experimental data characterizing antibody and T cell epitopes studied in humans, non-human primates, and other animal species. Epitopes involved in infectious disease, allergy, autoimmunity, and transplant are included.The database contains detailed...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • Heterogeneity in Human Immune Cells

    Heterogeneity in Human Immune Cells is a website providing interactive figures (iFigs) for a recent study of protein expression heterogeneity in human immune cells conducted by Dr. John Tsang's group (Systems Genomics and Bioinformatics Unit) at the Laboratory of Systems Biology, National Institute...

    coanstevensje@nih.gov - 2017-08-30 12:45

  • TrialShare

    TrialShare is a transformative approach to data-sharing that enables clinical trial transparency. TrialShare provides clinical trial investigators the unprecedented ability to access de-identified study data, review published analysis methods, and perform real-time, interactive graphical analyses in...

    coanstevensje@nih.gov - 2017-08-30 19:13

  • Omics4TB

    Omics4TB is part of the NIAID Systems Biology for Infectious Diseases Research program. Omics4TB focuses on tuberculosis and provides a portal for computational modeling to generate an integrated, predictive gene regulatory network model of host/pathogen interactions by using omics data....

    coanstevensje@nih.gov - 2017-08-30 19:13

  • JOINSOLVER

    JOINSOLVER is a web-based software program developed for human immunoglobulin V(D)J recombination analysis, and created by the National Institutes of Health, National Institute of Arthritis and Musculosketelal and Skin Diseases (NIAMS) and the Center for Information Technology (CIT). JOINSOLVER...

    coanstevensje@nih.gov - 2017-09-07 14:52

  • Nephele

    Nephele is a microbiome analysis engine which brings together microbiome data and analysis tools in a cloud computing environment. It offers robust, multi-step microbiome analysis pipelines, with no setup time or cost....

    coanstevensje@nih.gov - 2017-09-07 14:52

  • NIH 3D Print Exchange

    The NIH 3D Print Exchange provides models in formats that are readily compatible with 3D printers, and offers a unique set of tools to create and share 3D-printable models related to biomedical science. The NIH 3D Print Exchange eliminates this gap with an open, comprehensive, and interactive...

    coanstevensje@nih.gov - 2017-09-07 14:52

  • Papillomavirus Episteme (PaVE)

    The PapillomaVirus Episteme (PaVE) provides highly organized and curated papillomavirus genomics information and tools to the scientific community for research on the Papillomaviridae family of viruses. The PaVE consists of a database and web applications that support the storage, annotation,...

    coanstevensje@nih.gov - 2017-09-07 14:52

  • Simplified Presentation of Incredibly Complex Evaluations (SPICE)

    SPICE is a data-mining software application that analyzes large FLOWJO data sets from polychromatic flow cytometry and organizes the normalized data graphically. SPICE enables users to discover potential correlations in their experimental data within complex data sets. Many potential applications...

    coanstevensje@nih.gov - 2017-09-07 14:52

  • Simmune Project

    Simmune is a suite of software tools that guides the user through the multiple hierarchical scales of cellular behavior, facilitating the generation of comprehensive models. It was originally created to simulate immunological phenomena—hence its name, Simmune—but it is applicable to a very broad...

    coanstevensje@nih.gov - 2017-09-07 14:52

  • International Epidemiologic Database to Evaluate AIDS Data Exchange Standard (IeDEA DES)

    A common data model for sharing observational HIV data has been developed by the International epidemiology Databases to Evaluate AIDS (IeDEA). The IeDEA DES is used by the seven operational regions of IeDEA to exchange data with each other for collaborative research studies. The IeDEA DES...

    coanstevensje@nih.gov - 2017-09-08 14:17

  • Bioinformatics and Computational Biosciences Branch Services

    The Bioinformatics and Computational Biosciences Branch (BCBB) offers a suite of scientific services and resources for the NIAID research community and its collaborators. BCBB provides expertise and computational solutions to researchers at all levels of experience. Computational biologists...

    coanstevensje@nih.gov - 2017-09-21 15:27

  • NIAID Microbiome Program: Sequencing

    NIAID’s microbiome sequencing facility studies the structure and function of the microbiome associated with various hosts and body sites. This facility has one dedicated staff member and is equipped with an Ilumina MiSeq, which can sequence whole genomes or specific amplicons. Whole genome...

    coanstevensje@nih.gov - 2017-09-21 16:15

  • NIAID Microbiome Program: Metabolite Mass Spectrometry

    MALDI Biotyper (MBT) is a technology that identifies microorganisms using matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry to measure a unique peptide mass fingerprint. MBT measures highly abundant proteins that are found in all microorganisms and matches the...

    coanstevensje@nih.gov - 2017-09-21 16:21

  • QuSAGE: Quantitative Set Analysis for Gene Expression

    This Gene Set Enrichment-type test designed for analysis of microarray and RNASeq data is designed to provide a faster, more accurate, and easier to understand test for gene expression studies. QuSAGE extends previous methods with a complete probability density function (PDF). From this PDF, P...

    coanstevensje@nih.gov - 2018-02-12 19:02