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AIDS Imaging Research—Integrated Research Facility at Fort Detrick

The AIDS Imaging Research Section (AIRS) leverages preclinical and translational molecular imaging to study the pathogenesis of human immunodeficiency virus (HIV) infection using the simian/simian-human immunodeficiency virus (SIV/SHIV) nonhuman primate model.

NIH Researchers Uncover New Details on Rare Immune Disease

In an 11-year study, researchers at the National Institutes of Health have further characterized idiopathic CD4 lymphocytopenia (ICL), a rare immune deficiency that leaves people vulnerable to infectious diseases, autoimmune diseases and cancers. Researchers observed that people with the most severe cases of ICL had the highest risk of acquiring or developing several of the diseases associated with this immune deficiency. This study, published in the New England Journal of Medicine, was led by Irini Sereti M.D., M.H.S. and Andrea Lisco, M.D., Ph.D.

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Sinu P. John, Ph.D.

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Program Description

Our research focuses primarily on identification of cell intrinsic factors (protein coding and non-coding genes) associated with regulation of macrophage signaling. We use high throughput genome-wide techniques such as RNAi screening, CRISPR screening, RNA-seq, ATAC-seq, etc. to identify and characterize the genes and gene-regulatory mechanisms that modulate the immune response in macrophage cells. In addition, we study the role of various external factors (environmental pollutants, drugs, diet, etc.) that modulate the immune response in macrophages with an emphasis to develop therapeutic candidates for the treatment of infectious and immune diseases. We use both bacterial and several emerging viral models such as HIV, Influenza, SARS-CoV-2, etc. to study the impact of immune regulation by various intrinsic and external factors.

Selected Publications

John SP, Singh A, Sun J, Pierre MJ, Alsalih L, Lipsey C, Traore Z, Balcom-Luker S, Bradfield CJ, Song J, Markowitz TE, Smelkinson M, Ferrer M, Fraser IDC. Small-molecule screening identifies Syk kinase inhibition and rutaecarpine as modulators of macrophage training and SARS-CoV-2 infection. Cell Rep. 2022 Oct 4;41(1):111441.

John SP, Sun J, Carlson RJ, Cao B, Bradfield CJ, Song J, Smelkinson M, Fraser IDC. IFIT1 Exerts Opposing Regulatory Effects on the Inflammatory and Interferon Gene Programs in LPS-Activated Human Macrophages. Cell Rep. 2018 Oct 2;25(1):95-106.e6.

John SP, Chin CR, Perreira JM, Feeley EM, Aker AM, Savidis G, Smith SE, Elia AE, Everitt AR, Vora M, Pertel T, Elledge SJ, Kellam P, Brass AL. The CD225 domain of IFITM3 is required for both IFITM protein association and inhibition of influenza A virus and dengue virus replication. J Virol. 2013 Jul;87(14):7837-52.

Zhu J, Gaiha GD, John SP, Pertel T, Chin CR, Gao G, Qu H, Walker BD, Elledge SJ, Brass AL. Reactivation of latent HIV-1 by inhibition of BRD4. Cell Rep. 2012 Oct 25;2(4):807-16.

Everitt AR, Clare S, Pertel T, John SP, Wash RS, Smith SE, Chin CR, Feeley EM, Sims JS, Adams DJ, Wise HM, Kane L, Goulding D, Digard P, Anttila V, Baillie JK, Walsh TS, Hume DA, Palotie A, Xue Y, Colonna V, Tyler-Smith C, Dunning J, Gordon SB; GenISIS Investigators; MOSAIC Investigators; Smyth RL, Openshaw PJ, Dougan G, Brass AL, Kellam P. IFITM3 restricts the morbidity and mortality associated with influenza. Nature. 2012 Mar 25;484(7395):519-23.

Brass AL, Huang IC, Benita Y, John SP, Krishnan MN, Feeley EM, Ryan BJ, Weyer JL, van der Weyden L, Fikrig E, Adams DJ, Xavier RJ, Farzan M, Elledge SJ. The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus. Cell. 2009 Dec 24;139(7):1243-54.

Visit PubMed for a complete publication listing.

Major Areas of Research
  • Genes and epigenetic states modulating macrophage signaling and function
  • Identification and characterization of trained immunity stimuli
  • Applications of trained immunity in infectious and immune disease

NIAID-Supported Study Provides Stronger Evidence of Link Between RSV and Childhood Asthma

NIAID Now |

A NIAID-supported study has found that respiratory syncytial virus (RSV) infection in the first year of life is associated with a significantly increased risk of asthma in children. The study was published in the journal The Lancet. These findings provide additional evidence for a casual association between the occurrence of RSV infection in children younger than 1 and an increased incidence of wheezing and asthma in later in life.

RSV is a seasonal respiratory pathogen that affects almost all children by age 2, and repeatedly throughout life. In most children, symptoms of the virus are mild and usually resolve within a week. However, RSV can lead to death or serious illness, especially in premature or very young infants, and those with chronic lung disease or congenital heart disease, although about half of all RSV hospitalizations are among healthy infants. In infants (children younger than 1), RSV is the leading cause of bronchiolitis, a lower respiratory tract infection in infants and young children presenting with coughing and wheezing. Prior evidence on the links between RSV infection in infancy and respiratory health derives from studies of children with severe RSV bronchiolitis, which impacts a minority of children. The population-level asthma risk following RSV infection of any severity has not been studied before.

The “Infant Susceptibility to Pulmonary Infections and Asthma Following RSV Exposure (INSPIRE)” is the first cohort specifically designed to test the hypothesis that not being infected with RSV in infancy decreases the risk of childhood asthma. The population-based cohort study included 1,946 healthy infants born between June and December of 2012 and 2013 who were 6 months old or younger at the beginning of the RSV season (November to March in the study area of Tennessee). Biweekly surveillance and serology tests were used to classify infants as RSV infected or not infected in the first year of life. Of the 1,741 who received classifications, 54% were infected with RSV in the first year of life.

Participants were followed prospectively for five years and then evaluated for 5-year current asthma, which was defined as 1) a parental report of diagnosed asthma or the use of asthma medications before age 5, and 2) any of the following in the 12 months prior to the 5-year visit: asthma symptoms, use of systemic (oral or intravenous) steroids for asthma, or doctor or emergency room visits for asthma symptoms.

The study found that infants who were not infected with RSV in the first year of life had a 26% lower risk of asthma at 5 years of age than those who were infected with RSV as infants. Because the study was observational, the results do not definitively establish causality but do support a need for long-term follow-up of common respiratory outcomes among children in clinical trials of RSV prevention products.

Infancy is a critical time for immune system and pulmonary development; understanding how RSV infection before age 1 is associated with an increased risk of childhood asthma could help to prevent long-term childhood respiratory morbidity.

The study was funded by NIAID, the National Heart, Lung and Blood Institute, the National Center for Advancing Translational Sciences and the Eunice Kennedy Shriver National Institute of Child Health and Human Development.

Reference: C Rosas-Salazar, et al. Respiratory syncytial virus infection during infancy and asthma during childhood in the USA (INSPIRE): a population-based, prospective birth cohort study.

The Lancet DOI: 10.1016/S0140-6736(23)00811-5 (2023)

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Universal Influenza Candidate Vaccine Performs Well in Phase 1 Trial

NIAID Now |

Universal Influenza Candidate Vaccine Performs Well in Phase 1 Trial
mRNA Version of NIAID Vaccine Begins Similar Testing 

Scientists at NIAID’s Vaccine Research Center (VRC) report in two new studies that an experimental influenza vaccine, designed to elicit immunity against a broad range of influenza viruses, performed well in a small trial of volunteers. In fact, the vaccine has advanced to a second trial led by scientists at Duke University through NIAID’s Collaborative Influenza Vaccine Innovation Centers (CIVICs).

In a phase 1 clinical trial of 52 volunteers, the vaccine developed by the VRC – known as H1ssF (influenza H1 hemagglutinin stabilized stem ferritin nanoparticle vaccine) – was safe, well-tolerated, and induced broad antibody responses that target the hemagglutinin stem. The two new studies assessing the nanoparticle vaccine published April 19 in Science Translational Medicine.

Healthy volunteers ages 18-70 enrolled at the NIH’s Clinical Center and were given either a single 20-microgram dose or two 60-microgram vaccine doses. Boosters were given 16 weeks after the initial dose. The trial enrolled between April 1, 2019, and March 9, 2020. 

Trial participants did not experience any severe adverse events; the most common vaccine reactions included mild headache, tenderness at the vaccine site, and temporary general discomfort.

As anticipated based on preclinical study results, H1ssF generated binding antibodies to the stem of the influenza H1 hemagglutinin (HA) protein. Antibody responses were observed regardless of dose or participant age. “These responses were durable, with neutralizing antibodies observed over one year after vaccination,” the authors stated, suggesting this vaccine prototype can advance further universal influenza vaccine development.

The H1ssF vaccine using an mRNA delivery system also began testing in a phase 1 clinical trial being overseen by scientists at the Duke Human Vaccine Institute, a part of NIAID’s CIVICs network. 

HA is composed of head and stem domains and enables the influenza virus to attach and enter a human cell. The immune system can mount an immune response to HA, but most of the response is directed toward the head. Influenza vaccines must be updated each year because the HA head constantly changes – a phenomenon called “antigenic drift.” The new vaccine candidate consists only of the HA stem. The stem is more conserved than the head between influenza strains and subtypes, and thus is less likely to change every season. Scientists predict that targeting the HA stem without the distraction of the HA head could induce stronger and longer-lasting immunity.

Influenza A viral HA can be divided into groups 1 and 2, and further subdivided into multiple subtypes based on their sequences. Scientists used the stem of an HA from a group 1 influenza virus to create the nanoparticle vaccine. Both group 1 and group 2 influenza viruses are among those responsible for seasonal influenza as well as the sporadic and deadly outbreaks of avian influenza viruses with pandemic potential. The H1ssF vaccine elicited responses that broadly neutralized group 1 influenza A viruses. Additional clinical trials are underway to test a ferritin nanoparticle-based vaccine designed to elicit group 2 influenza A viruses, and to test the H1ssF and the group 2 vaccine together in a cocktail aimed at approaching universal influenza vaccine coverage.

The H1ssF vaccine is unique in that it only displays the stem part of the influenza HA protein on the surface of a nanoparticle made of nonhuman ferritin. Ferritin spontaneously self-assembles into an eight-sided nanoparticle. When designed to display a part of the HA protein, the ferritin-HA proteins form particles displaying HA spikes on their surface, mimicking the natural organization of HA on the influenza virus. Displaying influenza HA surface proteins on the outside of the nanoparticle makes them easily accessible to immune cells that encounter the nanoparticle. The immune system can then learn to develop antibodies against displayed proteins. 

References:
A Widge, et al. An Influenza Hemagglutinin Stem Nanoparticle 1 Vaccine Induces Cross
Group 1 Neutralizing Antibodies in Healthy Adults. Science Translational Medicine DOI: 10.1126/scitranslmed.ade4790 (2023).

S Andrews, et al. An Influenza H1 Hemagglutinin Stem-Only Immunogen Elicits a Broadly Cross-Reactive B Cell Response in Humans. Science Translational Medicine DOI: 10.1126/scitranslmed.ade4976 (2023).

ClinicalTrials.gov search identifier NCT03814720.

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Funding to Characterize Post-Tuberculosis Lung Disease in HIV-Infected Individuals

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NIAID’s new notice of funding opportunity (NOFO) Pulmonary Outcomes and Sequelae after Treatment-TB (POST-TB) (R01, Clinical Trial Optional) invites epidemiological and observational research projects on the long-term cardiopulmonary sequelae following treatment for tuberculosis (TB) in persons living with and without HIV infection. A better understanding of post-TB lung disease (PLTD) should yield better targets for interventions to reduce the burden of long-term cardiopulmonary disease sequelae following treatment for TB.

For this NOFO, investigators should evaluate the epidemiology and clinical manifestation of post-TB lung dysfunction, risk factors for dysfunction, predictors of severity, correlates of immune system responses (cellular as well as humoral), biomarkers of lung damage, and the impact of HIV infection and its treatment on PTLD. We also encourage investigators to explore mechanisms of pathology and the risk of recurrent TB or other disease.

We expect researchers will include participants during, after, or long after TB treatment. Studies could add clinical and immunologic evaluations during treatment, and at treatment completion, as well as include persons long after a well-documented TB treatment episode where data and samples enable in-depth research.

You might also employ case-control study designs to compare persons with a history of TB to suitable controls. It should be noted that the emphasis is on understanding PTLD in persons with and without HIV who have uncomplicated TB disease and who are cured by therapy. Enrolled participants should meet or be likely to meet the current WHO definitions for treatment cure or completion and not have been considered "lost to follow-up" at any time during their treatment.

The NOFO provides a nonexclusive list of example research topics:

  • In-depth assessments of lung dysfunction prevalence and severity in persons cured of TB infection.
  • Measures of immune system responses (cellular as well as humoral) and their impact on lung function over time.
  • The impact of HIV infection on the severity or type of dysfunction after TB cure.
  • Predictors and correlates of dysfunction and severity of damage.
    • Identification of biomarkers predictive of PLTD occurrence and severity.
    • Individual vulnerabilities and resilience to PLTD occurrence and severity.
    • Structural vulnerabilities and resilience to PLTD occurrence and severity.
  • Risk of recurrent TB and other lung or respiratory infections.
  • Risk of cardiovascular disease or chronic organizing pneumonia and chronic obstructive pulmonary disease in persons with PLTD.
  • Quantification of the burden of PLTD on patients and their families.

You could also evaluate the incidence of cardiopulmonary disease in HIV-infected and uninfected persons, immunologic factors and biomarkers indicative of lung damage, and the impact of other potential risk factors such as alcohol or tobacco use, nutritional status, and environmental exposures. Further, you may consider preventative care such as pneumococcal and influenza vaccination, including antibiotic use in respiratory infections.

Conversely, NIAID will deem nonresponsive and not review applications that propose:

  • Studies focused only on the pharmacologic or clinical impact of individual TB drugs, short-, or long-course treatment regimens.
  • Studies of persons with multidrug-resistant or extensively drug-resistant TB, or those with poor adherence to TB therapy.

Clinical trials are optional but, for the sake of completing application forms properly, you need to be clear on whether or not your proposed research meets NIH’s Definition of a Clinical Trial.

Administrative Requirements

The NOFO does not set a budget cap, although your budget needs to reflect the actual needs of the proposed project. For a budget request with direct costs exceeding $500,000 in any 1 year, you must receive NIAID’s approval before submitting. The scope of the proposed project should determine your project period, although the project period cannot exceed 5 years.

Foreign organizations are eligible to apply. Foreign components are allowed.

The NOFO uses NIH’s standard due dates for AIDS and AIDS-Related Applications. The first submission deadline is September 7, 2023.

If you have any questions about the NOFO, direct them to NIAID’s scientific/research contact Dr. Robin Huebner at rhuebner@niaid.nih.gov or 240-627-3216

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Email us at deaweb@niaid.nih.gov for help navigating NIAID’s grant and contract policies and procedures.

Mechanisms Underlying Autoimmunity in Down Syndrome Revealed