Portia Gough, Ph.D.

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Host Microbe Symbiosis Unit
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It is well known that the microbiome plays a role in almost every aspect of human physiology, yet much remains to be understood about the specific mechanisms of how commensal microbes affect human cellular function. The Host Microbe Symbiosis unit focuses on such mechanisms, with a particular focus on innate immune signaling and homeostasis at barrier sites such as the skin. Although the immune system likely expends most of its energy interacting with the multitude of organisms that occupy the human body, our knowledge of these interactions and how they influence the function of the immune system remains fairly limited. 

As allergic and autoimmune diseases and antibiotic-resistant infections become more common, it becomes increasingly necessary for us to better understand how commensal microbes shape immunity and homeostasis. The overarching principle of our research is that commensal organisms influence innate immune signaling at barrier sites via interactions with epithelial and immune cells and direct competition with pathogens. Therefore, understanding both the signaling between commensals and human cells and microbial interspecies interactions can lead to the development of targeted microbial therapeutics that reduce susceptibility to infection and maintain optimal function of barrier sites in the body. 

One such targeted microbial therapeutic is Roseomonas mucosa. This commensal skin bacteria was developed as a topical probiotic for atopic dermatitis by Dr. Ian Myles, also of the Laboratory of Clinical Immunology and Microbiology. R. mucosa serves as a model for how microbes can be used to effectively treat dysbiotic disease and restore optimal function to the skin, and it is the focus of our research thus far in the Host Microbe Symbiosis Unit. Our research is defining the mechanisms by which R. mucosa mediates immune regulation and supports homeostasis of the skin, particularly through its interaction with TLR5 and its bacteriostatic effects on Staphylococcus aureus. These studies provide a framework for future studies of other host-commensal interactions.  

The main techniques utilized in our study of host-commensal interactions are in vitro modeling with primary human cells, mouse models, quantitative proteomics, and various immunoassays to evaluate the interaction in three areas: initial contact of the microbe with host tissue (adhesion), downstream signaling from the activated receptor (e.g., TLR5), and the outcomes of the activated signaling pathway (cytokine, chemokine, antimicrobial peptide production, cell proliferation). A particular focus of the lab is that the downstream effects of interaction between commensal bacteria and TLRs appear to differ from the activation of TLRs by pathogen-derived ligands in a way that likely fine-tunes inflammatory responses for the host.  

Selected Publications
Major Areas of Research
  • Host-microbe interactions
    • Role of commensal bacteria in homeostasis 
    • Toll-like Receptor (TLR) signaling in interactions with commensal bacteria 
    • Effects of microbiota in innate immune regulation at barrier sites 
    • Protective effects of microbiota during infection

Apply to Research Initiative to Enhance Vaccine and Antibiotic Allergy Research

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Apply to NIAID’s notice of funding opportunity (NOFO) Research Initiative for Vaccine and Antibiotic Allergy (UG3/UH3, Clinical Trial Not Allowed) for funding to conduct research that enhances understanding of antibiotic and vaccine allergies.  

Allergic reactions to drugs and vaccines are a serious public health concern that causes wide and varied reactions, which include not only Immunoglobulin E (IgE)-mediated reactions, but other immune-mediated, largely unpredictable drug and vaccine reactions. An antibiotic allergy can lead to use of alternative, more expensive antibiotics, which may reduce efficacy and increase mortality in patients. Additionally, vaccine allergies can contribute to vaccine hesitancy, creating a public health issue.  

Objectives 

This NOFO seeks innovative projects to study the mechanisms and management of vaccine or antibiotic drug allergy (research on allergic responses to anti-viral, anti-fungal, and anti-parasitic drugs are also valid for consideration). 

The scope of research into antibiotic or vaccine allergic reactions includes the following: 

  • IgE-mediated and other mechanisms of immediate allergic antibiotic or vaccine reactions. 
  • Non-IgE-mediated urticarial reactions to antibiotics or vaccines. 
  • Delayed-type hypersensitivity reactions to antibiotics or vaccines.  
  • Severe cutaneous adverse antibiotic or vaccine reactions. 
  • Biomarkers to identify people at risk for reaction or to confirm reactions to specific antibiotics or vaccines. 
  • Host factors that may predispose to allergic reactions including, but not limited to, host microbiome, genetics, or inflammatory conditions. 
  • Mechanisms by which specific infections may increase the risk of an allergic reaction to an antibiotic or vaccine. 
  • Immunomodulatory approaches to treating or preventing immunologic adverse antibiotic or vaccine reactions.

A secondary objective of this NOFO is to expand the number of investigators working in the field of vaccine and antibiotic drug allergy. We strongly encourage early-stage investigators to apply.  

UG3/UH3 Phase Transition and Milestones 

This funding opportunity is designed as a two-stage cooperative agreement in which NIAID project scientists will work with the investigative teams. Projects must be organized into a 2-year UG3 phase followed by a 3-year UH3 phase. The UG3 phase may include pilot, observational, or hypothesis-generating high-risk projects.  

Preliminary data may be helpful but are not required within the application. You may propose to use electronic health records to identify potential participants for mechanistic studies. You are encouraged to use human samples such as those related to the clinically indicated and routinely used interventions or tests.  

The UG3 phase must include milestones to determine the success of the project at the end of this phase. Milestones may be negotiated or re-negotiated after award as this program includes the flexibility to quickly revise milestones or aims within the scope of the original peer-reviewed application. Following the completion of the UG3 phase, NIAID staff will review the progress made and determine whether the project will continue to the UH3 phase.  

NIAID support for the UH3 phase is contingent upon progress made during the UG3 phase, meeting the milestones, programmatic priorities, the original UG3/UH3 peer review recommendations, and the availability of funds. Some projects might not transition from the UG3 to the UH3 phase. Projects supported by the UH3 phase are hypothesis driven, mechanistic, and should extend the work initiated by the UG3 phase.  

Nonresponsive Research Topics 

NIAID will consider applications that propose the following topics to be nonresponsive and not review them:  

  • Adverse drug reactions that are predictable or related to pharmacologic properties of the drug such as toxicity or overdose. 
  • Investigation into drugs that are not antibiotics or vaccines (however, research on anti-viral, anti-fungal, and anti-parasitic drugs is allowed). 
  • Investigations into Guillain-Barré Syndrome or drug-induced autoimmune reactions. 
  • Investigations of central nervous system and other neurologic adverse responses. 
  • Investigations into the pathogens rather than host allergic responses to the antibiotics or vaccines. 
  • Applications that do not propose mechanistic research in the UH3 phase. 
  • Vaccines that are administered via a route that is not FDA approved.  
  • Vaccines that are used as an immunotherapeutic (e.g., allergen immunotherapy). 
  • HIV/AIDS research.

Additionally, applications that do not describe a 2-year UG3 phase and a 3-year UH3 phase in the research strategy will be considered nonresponsive and will not be reviewed.  

Award and Budget Information 

NIAID will fund four or five awards in fiscal year 2025. Application budgets are not expected to exceed $250,000 in annual direct costs and must reflect the actual needs of the proposed project.  

The proposed project period for the initial phase (UG3) must be 2 years and the proposed project period for the subsequent phase (UH3) must be 3 years, with the total project period being 5 years. 

Deadline 

Submit your application by June 21, 2024, at 5 p.m. local time of the applicant organization. 

Send any inquiries to Dr. Patricia Fulkerson, NIAID’s scientific contact, at patricia.fulkerson@nih.gov or 202-641-4535. Send questions about peer review to Dr. Poonam Tewary at poonam.tewary@nih.gov or 301-761-7219.

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$3.9 Million Grant Funds Research on Maternal Influence in Children’s Allergy Development

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$3.9 Million Grant Funds Research on Maternal Influence in Children’s Allergy Development
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NIH Statement on World Asthma Day 2023

Today, the National Institutes of Health recognizes World Asthma Day and the innovative research that is helping to shed light on the disease, pave the way for effective treatments and improve the lives of people who have asthma.

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Some Reported Allergic Reactions to mRNA COVID-19 Vaccines Were Likely Stress Responses

NIAID Now |

NIAID Investigators Demonstrate How Stress Responses Closely Mimic Allergic Reactions

Some responses to the mRNA COVID-19 vaccines reported as severe allergic reactions were likely a recently described, non-allergic condition called immunization stress-related response (ISRR), according to NIAID investigators. The symptoms of ISRR can closely mimic those of a severe allergic reaction known as anaphylaxis, a potentially life-threatening, systemic allergic reaction in which the immune system releases a dangerous flood of chemicals. These findings from a small study are being presented today at the 2023 Annual Meeting of the American Academy of Allergy, Asthma & Immunology in San Antonio. 

As defined by the World Health Organization, ISRR encompasses a range of signs and symptoms that may arise before, during or immediately after immunization and are related to stress from the process of immunization, not to the vaccine product. Some of the manifestations of ISRR are the same as those that occur during anaphylaxis, including a rapid pulse, throat tightness, lightheadedness, trouble breathing, and nausea.

The reported rate of severe allergic reactions to immunization with mRNA COVID-19 vaccines, while estimated to be on the order of just five cases per million doses administered, is still higher than that reported for conventional vaccines. To better understand this phenomenon, NIAID researchers assessed the safety of a second dose of an mRNA COVID-19 vaccine in people who had experienced a systemic allergic reaction after their first dose. The study was led by Muhammad B. Khalid, M.D., a clinical fellow in the NIAID Laboratory of Allergic Diseases, and Pamela A. Frischmeyer-Guerrerio, M.D., Ph.D., the laboratory chief.

The investigators enrolled 16 people ages 16 to 69 years who had a moderate or severe systemic allergic reaction to their first dose of the Moderna or Pfizer-BioNTech COVID-19 vaccine. The study participants were admitted for a minimum of four days to the Intensive Care Unit at the NIH Clinical Center in a closely supervised, safe and controlled environment. There, they received the Pfizer-BioNTech mRNA COVID-19 vaccine and a look-alike injection of placebo in a random order on different days. Neither the participants nor the investigators knew which shot was being given on which day. At admission and during the inpatient stay, participants underwent breathing tests and frequent blood draws so medical staff could discern the details of any allergic or other responses to the vaccine.

People who had an allergic reaction to the first dose of a vaccine would be expected to have an allergic reaction to subsequent doses with equal or greater severity. However, only three participants, or 19%, developed an allergic reaction within minutes of receiving the second dose of vaccine, and one reaction was mild while two were moderate. As expected, no one developed an allergic reaction to the placebo.

By contrast, nine study participants developed a non-allergic reaction within minutes of receiving the vaccine, and 11 developed a non-allergic reaction within minutes of receiving the placebo. The non-allergic reactions included numbness, tingling, dizziness, throat tightness, difficulty swallowing, and temporarily high blood pressure—signs and symptoms consistent with ISRR. Forty-five percent of these reactions were classified as moderate to severe.

To further probe the nature of the volunteers’ responses to mRNA COVID-19 vaccines, the study team administered an open-label booster dose of the Pfizer-BioNTech vaccine and performed skin testing for allergic reactions. Thirteen participants completed this part of the study and another three were scheduled to do so.

The skin testing began with a so-called skin-prick test. A tiny drop of the Pfizer-BioNTech vaccine, a vaccine component called polyethylene glycol (PEG), and a related chemical called polysorbate were placed on the skin, and a small prick was made through each drop into the skin. If this did not elicit a small, short-lived rash indicating an allergic response, the researchers injected a small amount of the vaccine into a superficial skin layer for an intradermal test.

The investigators found that none of the participants reacted to PEG or polysorbate. Two participants reacted to the vaccine during the intradermal test, but only one of these individuals had allergic reactions to every vaccine dose they received before and during the study. The other person had a reported allergic reaction only to the dose they received before entering the study. Taken together, these findings further support the hypothesis that some reports of allergic reactions to the mRNA COVID-19 vaccines were non-allergic responses, and that these methods of testing are not very predictive of who will have a reaction—whether allergic or ISRR—to the vaccine.  

People who have had a suspected allergic reaction to an mRNA COVID-19 vaccine should discuss it with their physician. If it was a true allergic reaction, then the individual should follow current medical advice regarding vaccination allergy. However, if the reaction was more consistent with ISRR, then the person can be reassured they have not had a severe immune reaction to the vaccine and can safely receive subsequent doses.

It is important to realize that ISRR can repeat at subsequent vaccinations. Physicians can suggest interventions that may reduce the symptoms of this condition.

The researchers expect to submit a complete and detailed report of their findings to a peer-reviewed journal for publication. An abstract of the study was published in a supplement to the Journal of Allergy and Clinical Immunology on February 3, 2023. For more information about this research, please visit ClinicalTrials.gov and search using study identifier NCT04977479.

References:

MB Khalid. COVID-19 mRNA vaccine-induced immunization stress-related response (ISRR) and anaphylaxis: an early look at COVAAR clinical outcomes. Presentation at the AAAAI 2023 Annual Meeting in San Antonio, Texas. Monday, Feb. 27, 2023, at 1 pm CT.

MB Khalid et al. COVID-19 mRNA vaccine-induced immunization stress-related response (ISRR) and anaphylaxis: an early look at COVAAR clinical outcomes. Journal of Allergy and Clinical Immunology DOI: 10.1016/j.jaci.2022.12.687 (2023).

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NIH Study Links Specific Outdoor Air Pollutants to Asthma Attacks in Urban Children

Moderate levels of two outdoor air pollutants, ozone and fine particulate matter, are associated with non-viral asthma attacks in children and adolescents who live in low-income urban areas, a study funded by the National Institutes of Health has found. The study also identifies associations between exposure to the two pollutants and molecular changes in the children’s airways during non-viral asthma attacks, suggesting potential mechanisms for those attacks.

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First FDA-Approved Treatment for Eosinophilic Esophagitis Has Roots in NIAID-Funded Research

NIAID Now |

The first Food and Drug Administration approval of a treatment for eosinophilic esophagitis, announced in May 2022, marked a vital achievement not only for people with the disease, but also for scientists including a NIAID grantee whose research helped lay a foundation for this milestone.

Eosinophilic esophagitis, or EoE, is a chronic disease characterized by an overabundance of a specific type of white blood cell, an eosinophil, in the esophagus. The disease is driven by allergic inflammation due to food. This inflammation damages the esophagus and prevents it from working properly. For people with EoE, swallowing even small amounts of food can be a painful and worrisome choking experience. EoE is the most common reason people must go to emergency departments for a healthcare provider to remove food stuck in their esophagus. People with EoE are often left to contend with the frustration and anxiety of a sometimes-lengthy list of foods to avoid, a poor quality of life, and a higher risk of depression. In severe cases, a feeding tube may be the only option to ensure proper caloric intake and adequate nutrition. About 160,000 people in the United States are living with EoE.

NIAID funding enabled Marc E. Rothenberg, M.D., Ph.D., at Cincinnati Children’s in Ohio to conduct basic and preclinical research starting in 1999 that uncovered the molecular cause of EoE. This finding suggested the type of drug needed to treat the disorder.

Before 2001, some in the medical community thought EoE was a form of acid reflux disease. Dr. Rothenberg’s lab published a paper that year establishing that EoE is actually an allergic disorder. The paper showed that mice exposed to an inhaled respiratory allergen developed EoE. This helped focus subsequent studies of EoE on the role of allergic inflammation.

A few years later, two seminal papers from Dr. Rothenberg’s lab identified the molecular changes taking place in the esophagus of people with EoE and showed that a cell-signaling molecule called IL-13 was responsible for many of those changes. IL-13 and another cell-signaling molecule, IL-4, together drive allergic inflammation in many diseases.

The first of these two key papers reported the results of an analysis of gene expression in cells on the lining of the esophagus in people with and without EoE. The study identified 574 genes that were copied into RNA “transcripts”—the instructions for making proteins—in greater or smaller numbers in people with EoE than in healthy people. This EoE transcript signature, or transcriptome, served as a key reference for subsequent studies of the disorder.

The second paper demonstrated in 2007 that many of the EoE-associated genes identified in the earlier paper are directly activated by IL-13 in cells lining the esophagus, implicating this molecule as a major regulator of the biological pathways involved in EoE. This finding suggested that IL-13-blocking drugs might effectively treat the disease. The study further showed that 98% of the EoE transcriptome reverted to normal levels of gene expression in people whose EoE was successfully treated with a class of steroid hormones called glucocorticoids. This indicated that the EoE transcriptome changes in response to changes in signs and symptoms of the disease. Dr. Rothenberg and colleagues therefore proposed using the EoE transcriptome to monitor the efficacy and mechanism of action of IL-13-blocking drugs at the molecular level.

Several years later, Dr. Rothenberg designed and led the first clinical trial to test the efficacy of an anti-IL-13 monoclonal antibody for treating EoE. The investigators found that the antibody lowered levels of eosinophils in the esophagus and returned the expression of 29 key genes in the EoE transcriptome to normal levels in most treated participants. This and related molecular analyses from the trial, funded by Novartis Pharma AG of Basel, Switzerland, further supported Dr. Rothenberg’s theory that EoE was driven by IL-13.

These findings contributed to a body of foundational EoE research developed by a multitude of scientists and physicians. This scientific foundation, among many other factors, led Regeneron Pharmaceuticals Inc. of Tarrytown, New York, and Sanofi of Paris to begin testing one of their drugs for the treatment of EoE. The drug, a monoclonal antibody called dupilumab, works by blocking both IL-13 and IL-4.

Ultimately, Regeneron and Sanofi conducted a Phase 3 clinical trial showing dupilumab substantially improved the signs and symptoms of EoE compared to a placebo. Based on these results, FDA approved dupilumab for the treatment of the disease on May 20, 2022, making it the first medicine specifically indicated to treat EoE in the United States.

NIAID-funded basic and translational research continues to contribute to the development of preventive and therapeutic strategies for dozens of allergic, immunologic, and infectious diseases.

References:

A Mishra, et al. An etiological role for aeroallergens and eosinophils in experimental esophagitis. The Journal of Clinical Investigation DOI: 10.1172/JCI10224 (2001).

C Blanchard, et al. Eotaxin-3 and a uniquely conserved gene-expression profile in eosinophilic esophagitis. The Journal of Clinical Investigation DOI: 10.1172/JCI26679 (2006).

C Blanchard, et al. IL-13 involvement in eosinophilic esophagitis: Transcriptome analysis and reversibility with glucocorticoids. Journal of Allergy and Clinical Immunology DOI: 10.1016/j.jaci.2007.10.024 (2007).

ME Rothenberg, et al. Intravenous anti–IL-13 mAb QAX576 for the treatment of eosinophilic esophagitis. Journal of Allergy and Clinical Immunology DOI: 10.1016/j.jaci.2014.07.049 (2015).

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Diagnosing Food Allergy

The gold standard for diagnosing food allergy is an oral food challenge. In this procedure, a food is eaten slowly, in gradually increasing amounts, under medical supervision to accurately diagnose or rule out a true food allergy. However, physicians use oral food challenges cautiously because the procedure is time-consuming, requires highly trained personnel, and can cause an acute allergic reaction.

Eric Van Dang, Ph.D.

Tenure-track investigator
Section or Unit Name
Molecular Mycology and Immunity Unit
First Name
Eric
Last Name
Dang
Middle Name
Van
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The Molecular Mycology and Immunity Section (MMIS) studies the molecular and cellular interactions between fungi and their hosts. Mammalian barrier tissues (gut, skin, lungs) are colonized by a plethora of microbial species that play important roles in shaping host immunity and physiology. While most research has thus far focused on bacteria, fungi are increasingly recognized as important components of our commensal flora. In addition to commensals, there are a number of fungal pathogens that cause a high human disease burden, leading to 300 million infections and up to 1.5 million deaths per year globally. These infections are difficult to treat, due to a lack of effective drugs and the increased emergence of drug-resistant pathogens.      

Our laboratory operates at the intersection of microbiology and immunology to understand the factors that dictate the outcome of fungal exposure at barrier tissues. We take an interdisciplinary approach leveraging fungal/mouse genetics, molecular biology, biochemistry, CRISPR, cellular immunology, and imaging approaches to address three major research topics:

  1. Mechanisms and impact of host colonization by fungi: A major interest in our group is understanding how fungi colonize and impact host barrier tissues. We utilize yeast forward genetic screens to identify molecules that drive fungal evasion of the host immune system. We also aim to identify fungal secondary metabolites that act on host receptors/signaling pathways in order to understand how fungal colonization impacts mammalian tissue physiology.
  2. Mechanisms and regulation of innate immune detection of fungi: Mammalian immune systems utilize germline-encoded pattern recognition receptors (PRRs) to 
  3. detect invading microbes. Specific detection of fungal pathogens is largely mediated by extracellular sugar-sensing receptors of the C-type lectin receptor (CLR) family. While there has been major progress in identifying the ligands and downstream signaling pathways of these receptors, there is still much to learn about how CLR activation is regulated. We seek to understand the molecular pathways that activate/inhibit CLR signaling, and how these pathways are controlled by environmental cues sensed by myeloid cells in tissues. We are also focused on understanding mechanisms of cell-autonomous innate immunity to fungal pathogens, such as how intracellular fungi are detected and cleared by cytosolic surveillance pathways.
  4. Myeloid cell responses to fungal infection in vivo: We seek to understand the cellular mechanisms underlying protective versus aberrant immunity to fungal infection. One major interest is understanding how alternatively activated macrophages induced by type 2 cytokine signaling influence fungal immunity and infection outcomes. We are also interested in how dendritic cells interact with fungi to shape discrete T cell differentiation states. Lastly, we seek to dissect the roles of other recruited myeloid cells (monocytes, eosinophils, neutrophils, basophils) during fungal infection.
Selected Publications

Dang E.V., Lei S, Radkov A, Volk R.F., Zaro B.W., Madhani H.D. Secreted fungal virulence effector triggers allergic inflammation via TLR4. Nature. 2022 (In Press).

Dang EV, McDonald JG, Russell DW, Cyster JG. Oxysterol Restraint of Cholesterol Synthesis Prevents AIM2 Inflammasome Activation. Cell. 2017 Nov 16;171(5):1057-1071.e11.

Lu E, Dang EV, McDonald JG, Cyster JG. Distinct oxysterol requirements for positioning naïve and activated dendritic cells in the spleen. Sci Immunol. 2017 Apr 7;2(10):eaal5237.

Reboldi A, Dang EV, McDonald JG, Liang G, Russell DW, Cyster JG. Inflammation. 25-Hydroxycholesterol suppresses interleukin-1-driven inflammation downstream of type I interferon. Science. 2014 Aug 8;345(6197):679-84.

Dang EV, Barbi J, Yang HY, Jinasena D, Yu H, Zheng Y, Bordman Z, Fu J, Kim Y, Yen HR, Luo W, Zeller K, Shimoda L, Topalian SL, Semenza GL, Dang CV, Pardoll DM, Pan F. Control of T(H)17/T(reg) balance by hypoxia-inducible factor 1. Cell. 2011 Sep 2;146(5):772-84.

Visit PubMed for a complete publication list.

Major Areas of Research
  • Innate immune detection of fungal pathogens
  • Fungal crosstalk with mammalian hosts
  • Mechanisms of fungal persistence/colonization at barrier tissues
  • Cellular mechanisms of antifungal immune response in vivo

Eric Van Dang, Ph.D.

Education:

Ph.D., 2018, University of California, San Francisco

B.A., 2010, Johns Hopkins University

Portrait of Eric Van Dang, Ph.D.