Clinical Metadata Standard Appendix

DMID Metadata Standards Bacteria Specific

v1.4

How to interpret the document:
BOLD: Field Name
ITALICS: Attributes of the field

1. Bacteria Antibiotic Sensitivity 
Project-Specific Field ID: BAC1 
Field Name: Bacteria Antibiotic Sensitivity 
Description: Results of tests for antibiotic resistance, usually measured in minimum inhibitory concentration (MIC). Format: name of an antibiotic followed by 'MIC' other name of other metric and a measure of the quantity of antibiotic in ug/ml. 

DMID Metadata Standards Project Specific

v1.4
Finalized by the GSCID/BRC Metadata Working Group

How to interpret the document:
BOLD: Field Name
ITALICS: Attributes of the field

1. Isolate 
Project-Specific Field ID: PS1 
Field Name: Isolate 
Description: 
NCBI Component Name: BioSample 
NCBI Component Synonym: isolate 
NCBI Component Definition: 
OBO Foundry Synonym: 
OBO Foundry Purl: 

DMID Metadata Standards Sequencing Assay

DMID Metadata Standards Core Sample

DMID Metadata Standards Core Project

Human Pathogen and Vector Sequencing Metadata Standards

Regulatory Affairs Support

NIAID Regulatory Affairs Support Program provides regulatory oversight of human subjects research and ensures compliance with federal, NIH, and NIAID regulations and policies.

Rocky Mountain spotted fever is a tickborne disease first recognized in 1896 in the Snake River Valley of Idaho. It was originally called “black measles” because of the look of its rash in the late stages of the illness, when the skin turns black. It was a dreaded, often fatal disease, affecting hundreds of people in Idaho. By the early 1900s, the disease could be found in Washington, Montana, California, Arizona, and New Mexico.

Tickborne diseases are becoming a serious problem in this country as people increasingly build homes in formerly uninhabited wilderness areas where ticks and their animal hosts live. Tickborne diseases can be caused by viruses, bacteria, or parasites. Most people become infected through tick bites during the spring and summer months.

Because of the work started by Dr. Ricketts in the early 1900s, NIAID Rocky Mountain Laboratories (RML) remains a thriving center for infectious disease research on tickborne diseases, such as Lyme disease and relapsing fever. RML also continues to do research on rickettsial diseases.

Related Public Health and Government Information

To learn about risk factors for Rocky Mountain spotted fever and current prevention and treatment strategies visit the Centers for Diseases Control and Prevention (CDC) Rocky Mountain spotted fever site.

Rocky Mountain Spotted Fever Hero Image
Dorsal view of a male cayenne tick, Amblyomma cajennense

A male cayenne tick, Amblyomma cajennense, a tick species which is a North, Central, and South American carrier of Rickettsia rickettsii bacteria, which cause Rocky Mountain spotted fever.

Credit: CDC
Rocky Mountain Spotted Fever
Page Summary
Rocky Mountain spotted fever is a tickborne disease first recognized in 1896 in the Snake River Valley of Idaho. It was originally called “black measles” because of the look of its rash in the late stages of the illness, when the skin turns black. It was a dreaded, often fatal disease, affecting hundreds of people in Idaho. By the early 1900s, the disease could be found in Washington, Montana, California, Arizona, and New Mexico.
Research Area Type
Diseases & Conditions

The incidence of tickborne infections in the United States has risen significantly within the past decade. Due to this increase, it is becoming more important that public health officials and scientists improve their understanding of pathogenesis, design improved diagnostics, and develop preventive vaccines for tickborne illnesses.

Tickborne diseases are becoming a serious problem in this country as people increasingly build homes in formerly uninhabited wilderness areas where ticks and their animal hosts live. Tickborne diseases can be caused by viruses, bacteria, or parasites. Most people become infected through tick bites during the spring and summer months.

Scientists are searching for better ways to diagnose, treat, and prevent tickborne diseases. They are also looking for ways to control the tick populations that transmit microbes.

Related Public Health and Government Information

To learn about risk factors for tickborne diseases and current prevention and treatment strategies visit the MedlinePlus tick bite site.

Tickborne Diseases image
Tickborne Diseases
Page Summary
The incidence of tickborne infections in the United States has risen significantly within the past decade. Due to this increase, it is becoming more important that public health officials and scientists improve their understanding of pathogenesis, design improved diagnostics, and develop preventive vaccines for tickborne illnesses.
Research Area Type
Diseases & Conditions