Joshua Tan, Ph.D.

Chief, Antibody Biology Unit
Earl Stadtman Tenure-Track Investigator

Major Areas of Research

  • Biology of antibody response to Plasmodium falciparum
  • Characterization of human monoclonal antibodies to infectious pathogens

Program Description

Human monoclonal antibodies are emerging as powerful tools in combating infectious disease, both as direct prophylactics and as reagents to identify vulnerable sites on pathogens to guide vaccine design. At the Antibody Biology Unit (ABU), we aim to use cutting-edge technology to study B cells at the single cell level and to identify and characterize human monoclonal antibodies against a range of pathogens. We have two major aims:

  1. To study basic antibody biology. The sequences of monoclonal antibodies isolated from a vaccinated or naturally infected individual provide a high-resolution portrait of the antibody response to a given pathogen. Information revealed includes the predominant antibody isotype that is generated, the degree of somatic mutation and affinity maturation required for the development of a potent neutralizing response, and the preferential usage of specific VH genes to mount a response against a given antigen.
  2. To investigate the use of monoclonal antibodies for prevention of infection and as tools for vaccine design. Monoclonal antibodies that are isolated will be screened in in vitro and in vivo assays to determine their potency in preventing infection. Their affinity for their targets will be measured using biophysical assays. In collaboration with structural biologists, we will identify the specific epitopes targeted by the most potent antibodies and develop these sites as novel vaccine candidates. The most potent antibodies will also be considered as candidates to prevent infection in early-phase clinical trials.

The primary focus of the unit will be on malaria. Plasmodium falciparum causes approximately 400,000 deaths a year and remains a serious global health threat. Antibodies have been shown to be key mediators of protection against different stages of the P. falciparum life cycle, but the antibody response to malaria has only recently been studied at high resolution. The biology of the antibody response to P. falciparum is complex and fascinating. Recently, we identified broadly reactive antibodies from individuals living in malaria-endemic areas that contain a LAIR1 insert (an extra immunoglobulin-like domain) that is originally encoded in a different chromosome. This insert confers broad reactivity and is somatically mutated along with the rest of the antibody. This insertion event appears to be quite common in individuals living in different malaria-endemic regions (5-10% of individuals). In a separate study, we identified potent human monoclonal antibodies targeting a novel epitope on the P. falciparum circumsporozoite protein, the major sporozoite coat protein. This site is now being investigated as a new vaccine candidate.

Our platform is adaptable to any target. This unit will also study human monoclonal antibodies against other infectious agents, including Mycobacterium tuberculosis and SARS-CoV-2, as well as non-infectious targets.

Biography

Joshua Tan, Ph.D., is a Stadtman Tenure-track Investigator and an NIH Distinguished Scholar in the Division of Intramural Research of the National Institute of Allergy and Infectious Diseases. He received his Ph.D. from the University of Oxford, England. Prior to joining the NIH, he was awarded the Pfizer Research Prize for his malaria work and the Sir Henry Wellcome Postdoctoral Fellowship to investigate human monoclonal antibodies that target the malaria-causing parasite P. falciparum.

Research Group

Andrew Cooper, Ph.D., Postdoctoral Fellow
Cherrelle Dacon, Ph.D., Postdoctoral Fellow
Divya Mohan, Biologist
Lauren Purser, Lab Manager
Lawrence Wang, Visiting PhD Student
Courtney Tucker, Ph.D. Student

Selected Publications

Cho H, Gonzales-Wartz KK, Huang D, Yuan M, Peterson M, Liang J, Beutler N, Torres JL, Cong Y, Postnikova E, Bangaru S, Talana CA, Shi W, Yang ES, Zhang Y, Leung K, Wang L, Peng L, Skinner J, Li S, Wu NC, Liu H, Dacon C, Moyer T, Cohen M, Zhao M, Lee FE, Weinberg RS, Douagi I, Gross R, Schmaljohn C, Pegu A, Mascola JR, Holbrook M, Nemazee D, Rogers TF, Ward AB, Wilson IA, Crompton PD and Tan J. 2021 Bispecific antibodies targeting distinct regions of the spike protein potently neutralize SARS-CoV-2 variants of concern. Sci Transl Med 13, eabj5413.

Tan J, Cho H, Pholcharee T, Pereira LS, Doumbo S, Doumtabe D, Flynn BJ, Schön A, Kanatani S, Aylor SO, Oyen D, Vistein R, Wang L, Dillon M, Skinner J, Peterson M, Li S, Idris AH, Molina-Cruz A, Zhao M, Olano LR, Lee PJ, Roth A, Sinnis P, Barillas-Mury C, Kayentao K, Ongoiba A, Francica JR, Traore B, Wilson IA, Seder RA and Crompton PD. 2021. Functional human IgA targets a conserved site on malaria sporozoites. Sci Transl Med 13, abg2344.

Tan J, Piccoli L and Lanzavecchia A. 2019. The antibody response to Plasmodium falciparum: cues for vaccine design and the discovery of receptor-based antibodies. Annu Rev Immunol 37, 225-246.

Tan J, Sack BK, Oyen D, Zenklusen I, Piccoli L, Barbieri S, Foglierini M, Fregni CS, Marcandalli J, Jongo S, Abdulla S, Perez L, Corradin G, Varani L, Sallusto F, Sim BKL, Hoffman SL, Kappe SHI, Daubenberger C, Wilson IA and Lanzavecchia A. 2018. A public antibody lineage that potently inhibits malaria infection through dual binding to the circumsporozoite protein. Nat Med 24, 401-407.

Pieper K, Tan J, Piccoli L, Foglierini M, Barbieri S, Chen Y, Fregni CS, Wolf T, Jarrossay D, Anderle M, Abdi A, Ndungu FM, Doumbo OK, Traore B, Tran TM, Jongo S, Zenklusen I, Crompton PD, Daubenberger C, Bull PC, Sallusto F and Lanzavecchia A. 2017. Public antibodies to malaria antigens generated by two LAIR1 insertion modalities. Nature 548, 597-601.

Tan J, Pieper K, Piccoli L, Abdi A, Foglierini M, Geiger R, Tully CM, Jarrossay D, Ndungu FM, Wambua J, Bejon P, Fregni CS, Fernandez-Rodriguez B, Barbieri S, Bianchi S, Marsh K, Thathy V, Corti D, Sallusto F, Bull P and Lanzavecchia A. 2016. A LAIR1 insertion generates broadly reactive antibodies against malaria variant antigens. Nature 529, 105-109.

Visit PubMed for a complete publication listing.

Section or Unit Name
Antibody Biology Unit

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Program Description

Human monoclonal antibodies are emerging as powerful tools to combat infectious disease. At the Antibody Biology Unit (ABU), we aim to use cutting-edge technology to study B cells at the single-cell level and to identify and characterize human monoclonal antibodies against a range of pathogens. The Unit currently focuses on diseases with substantial burden globally or in the United States.

ABU has two main objectives:

  1. Investigate the use of monoclonal antibodies for the prevention of infection and as tools for immunogen design: An array of tools, including the Berkeley Lights Beacon and Carterra LSA, will be used for high-throughput antibody identification and characterization. Monoclonal antibodies that are isolated will be screened in in vitro and in vivo assays to determine their potency in preventing infection. Their affinity for their targets will be measured using biophysical assays. In collaboration with structural biologists, we will identify the specific epitopes targeted by the most potent antibodies and develop these sites as novel immunogens. The most potent antibodies will also be considered as candidates to prevent infection in early-phase clinical trials.
  2. Study basic antibody biology: The sequences of monoclonal antibodies isolated from an immunized or naturally infected individual provide a high-resolution portrait of the antibody response to a given pathogen. Information revealed includes the predominant antibody isotype that is generated, the degree of somatic mutation and affinity maturation required for the development of a potent neutralizing response, and the preferential usage of specific VH genes to mount a response against a given antigen. 
Selected Publications

Dacon C, Moskovitz R, Swearingen K, Da Silva Pereira L, Flores-Garcia Y, Aleshnick M, Kanatani S, Flynn B, Molina-Cruz A, Wollenberg K, Traver M, Kirtley P, Purser L, Dillon M, Bonilla B, Franco A, Petros S, Kritzberg J, Tucker C, Paez GG, Gupta P, Shears MJ, Pazzi J, Edgar JM, Teng AA, Belmonte A, Oda K, Doumbo S, Krymskaya L, Skinner J, Li S, Ghosal S, Kayentao K, Ongoiba A, Vaughan A, Campo JJ, Traore B, Barillas-Mury C, Wijayalath W, Idris A, Crompton PD, Sinnis P, Wilder BK, Zavala F, Seder RA, Wilson IA, Tan J. Protective antibodies target cryptic epitope unmasked by cleavage of malaria sporozoite protein. Science. 2025 Jan 3;387(6729):eadr0510.

Wang LT, Cooper AJR, Farrell B, Miura K, Diouf A, Müller-Sienerth N, Crosnier C, Purser L, Kirtley PJ, Maciuszek M, Barrett JR, McHugh K, Ogwang R, Tucker C, Li S, Doumbo S, Doumtabe D, Pyo CW, Skinner J, Nielsen CM, Silk SE, Kayentao K, Ongoiba A, Zhao M, Nguyen DC, Lee FE, Minassian AM, Geraghty DE, Traore B, Seder RA, Wilder BK, Crompton PD, Wright GJ, Long CA, Draper SJ, Higgins MK, Tan J. Natural malaria infection elicits rare but potent neutralizing antibodies to the blood-stage antigen RH5. Cell. 2024 Sep 5;187(18):4981-4995.e14. 

Dacon C, Peng L, Lin TH, Tucker C, Lee CD, Cong Y, Wang L, Purser L, Cooper AJR, Williams JK, Pyo CW, Yuan M, Kosik I, Hu Z, Zhao M, Mohan D, Peterson M, Skinner J, Dixit S, Kollins E, Huzella L, Perry D, Byrum R, Lembirik S, Murphy M, Zhang Y, Yang ES, Chen M, Leung K, Weinberg RS, Pegu A, Geraghty DE, Davidson E, Doranz BJ, Douagi I, Moir S, Yewdell JW, Schmaljohn C, Crompton PD, Mascola JR, Holbrook MR, Nemazee D, Wilson IA, Tan J. Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronaviruses. Cell Host Microbe. 2023 Jun 14;31(6):1071-1072.

Dacon C, Tucker C, Peng L, Lee CD, Lin TH, Yuan M, Cong Y, Wang L, Purser L, Williams JK, Pyo CW, Kosik I, Hu Z, Zhao M, Mohan D, Cooper AJR, Peterson M, Skinner J, Dixit S, Kollins E, Huzella L, Perry D, Byrum R, Lembirik S, Drawbaugh D, Eaton B, Zhang Y, Yang ES, Chen M, Leung K, Weinberg RS, Pegu A, Geraghty DE, Davidson E, Douagi I, Moir S, Yewdell JW, Schmaljohn C, Crompton PD, Holbrook MR, Nemazee D, Mascola JR, Wilson IA, Tan J. Broadly neutralizing antibodies target the coronavirus fusion peptide. Science. 2022 Jul 12:eabq3773.

Cho H, Gonzales-Wartz KK, Huang D, Yuan M, Peterson M, Liang J, Beutler N, Torres JL, Cong Y, Postnikova E, Bangaru S, Talana CA, Shi W, Yang ES, Zhang Y, Leung K, Wang L, Peng L, Skinner J, Li S, Wu NC, Liu H, Dacon C, Moyer T, Cohen M, Zhao M, Lee FE, Weinberg RS, Douagi I, Gross R, Schmaljohn C, Pegu A, Mascola JR, Holbrook M, Nemazee D, Rogers TF, Ward AB, Wilson IA, Crompton PD, Tan J. Bispecific antibodies targeting distinct regions of the spike protein potently neutralize SARS-CoV-2 variants of concern. Sci Transl Med. 2021 Oct 20;13(616):eabj5413.

Tan J, Pieper K, Piccoli L, Abdi A, Perez MF, Geiger R, Tully CM, Jarrossay D, Maina Ndungu F, Wambua J, Bejon P, Fregni CS, Fernandez-Rodriguez B, Barbieri S, Bianchi S, Marsh K, Thathy V, Corti D, Sallusto F, Bull P, Lanzavecchia A. A LAIR1 insertion generates broadly reactive antibodies against malaria variant antigens. Nature. 2016 Jan 7;529(7584):105-109.

Visit PubMed for a complete publication listing.

Major Areas of Research
  • Development of monoclonal antibody therapeutics against pathogens
  • Characterization of human antibody response to infectious pathogens
  • Biology of antibody response to influenza, other viruses, Plasmodium falciparum, and Mycobacterium tuberculosis
Research Group Page

Systems Immunology of COVID-19

Participating Hospitals

Cytokine Profile

SARS-CoV-2 Antibody Response

TCR and BCR Repertoire

Project Title: Composition of T- and B-Cell Repertoire and Mapping of Virus-Specific T-Cell Receptor Sequences

NIAID Principal Investigator: Luigi Notarangelo, M.D.
Chief, Laboratory of Clinical Immunology and Microbiology
Chief, Immune Deficiency Genetics Section, LCIM

Host Genetics

Immune Response to COVID-19

Comprehensive analyses of innate and adaptive immune responses during acute COVID-19 infection and convalescence

The COVID-19 pandemic poses an unprecedented public health crisis. At present, our narrow understanding of the immune system’s response to the infection limits our capacity to prevent and treat severe disease. As part of the efforts outlined in the NIAID Strategic Plan for COVID-19 Research, NIAID researchers are spearheading a large, international collaboration to unveil the innate and adaptive immune responses during acute COVID-19 infection and convalescence. Each researcher will contribute their unique expertise to collectively elucidate the innate and adaptive immune response to COVID-19 infection. This synergistic coalition of researchers will work closely and share data to maximize the impact of patient samples. The overall goal is to identify immunological and virological correlates and predictors of clinical outcomes.

The research projects will examine the following:

  • Genetic markers of susceptibility to severe COVID-19 infection
  • Composition of T- and B-cell repertoire and mapping of virus-specific T-cell receptor (TCR) sequences
  • Cytokine and chemokine profiling, including interferon (IFN) signature and soluble markers of inflammation
  • Antibody responses to COVID-19 infection
  • Anti-cytokine autoantibodies
  • Levels of plasma gelsolin
  • Humoral immunological signature of the human virome
  • Anti-commensal antibody repertoire
  • Systems biology approach to understand changes in the immune system
  • Intrapatient SARS-CoV-2 genetic variation
  • Role of neutrophil extracellular traps (NETs)

How To Contribute

This website is designed to inform physicians of the research occurring at NIAID. If interested in contributing to any or all of these research projects, please reach out to the contact person on the respective project page.

As of September 2024, several projects including collaborative studies with external sites are still being pursued, but research activity has greatly diminished with the tailing off of the pandemic.

Host Genetics

Researchers in the Human Immunological Diseases Section believe COVID-19 causes mild or no illness in some individuals and not others because of our genetic makeup. The lab will sequence and analyze the genomes of previously healthy patients who experienced severe or fatal COVID-19 infection.

T-Cell and B-Cell Repertoires

The Immune Deficiency Genetics Section aims to analyze the dynamic changes that occur within an individual’s T-cell and B-cell repertoires during the transition from acute COVID-19 infection into convalescence.

Cytokine Profile

The Translational Autoinflammatory Diseases Section will harness the power of Nanostring and RNA-Seq to measure and characterize the pro-inflammatory cytokine signature of COVID-19. 

Antibody Response

The Medical Virology Section is interested in performing serologic studies to better understand the epidemiology of COVID-19 in specific cohorts.

Analysis of Autoantibodies

Researchers in the Immunopathogenesis Section believe that anti-cytokine antibodies that can neutralize antiviral cytokines may contribute to COVID-19 disease progression, as they do in other immune-mediated diseases.

Microbiome Immunity

The NIAID Microbiome Program and the Metaorganism Immunity Section propose that immune responses to the gut microbiota may predict which patients get very sick with COVID-19 while others remain asymptomatic. 

Systems Immunology

The Multiscale Systems Biology Section will integrate computational approaches and several cutting-edge high-throughput methods to assess changes in the epigenome, transcriptome, and proteome throughout the course of COVID-19 disease.

SARS-CoV-2 Genetics

The Virus Persistence and Dynamics Section will explore the intrapatient diversity of SARS-CoV-2 sequences using high-throughput, long-read, single-molecule sequencing.

Neutrophil Dysregulation in COVID-19

The Systemic Autoimmunity Branch at NIAMS will study in detail the role of neutrophil dysregulation and NETs in the induction of enhanced proinflammatory responses, tissue damage, vasculopathy, and prothrombotic manifestations.

Participating Hospitals

We seek hospitals to collaborate in our research project by submitting samples. For sample requirements, see the specific project pages.

Publications

These are original research publications using samples obtained from the NIAID COVID Consortium. Each paper addresses one or more of the scientific questions outlined in the project pages, with the goal of elucidating the immune response to COVID-19.

Content Coordinator

Evaluation of Patients With Immune Function Abnormalities

Use of G-CSF to Obtain Blood Cell Precursors